RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ZG16O60844 167 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 CLDN14O95500 239 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 GTF2F2P13984 249 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 RNASE12Q5GAN4 147 aaKnown RBP17.93■□□□□ 0.46
VPS28-208ENST00000527797 HAGHLQ6PII5 290 aaPredicted RBP17.93■□□□□ 0.46
VPS28-208ENST00000527797 LRP11Q86VZ4 500 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 SPERTQ8NA61 448 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 POC5Q8NA72 575 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 OR56B1Q8NGI3 324 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 OR10R2Q8NGX6 335 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 FCAMRQ8WWV6 532 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 NICN1Q9BSH3 213 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 SELENOIQ9C0D9 397 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 OR51I2Q9H344 312 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 ATP23Q9Y6H3 246 aa17.93■□□□□ 0.46
VPS28-208ENST00000527797 IGLV3-9A0A075B6K5 115 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 H0YL77 283 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 GABARAPH6UMI1 98 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 PRB1P04280 392 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 TFF3Q07654 80 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 FAM76BQ5HYJ3 339 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 HACD4Q5VWC8 232 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 Q6ZR03 302 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 TMEM200AQ86VY9 491 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 CHST4Q8NCG5 386 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 SETD6Q8TBK2 473 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 ITLN2Q8WWU7 325 aaPredicted RBP17.92■□□□□ 0.46
VPS28-208ENST00000527797 PLPPR2Q96GM1 343 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 SYT3Q9BQG1 590 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 TM2D1Q9BX74 207 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 PKIBQ9C010 78 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 CXXC4Q9H2H0 198 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 CA10Q9NS85 328 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 POU2F3Q9UKI9 436 aa17.92■□□□□ 0.46
VPS28-208ENST00000527797 PRR14LQ5THK1 2151 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 LRP5LA4QPB2 252 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 TMEM210A6NLX4 147 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 MLNRO43193 412 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 CD3GP09693 182 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 PTHLHP12272 177 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 CPT2P23786 658 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 FAM89BQ8N5H3 189 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 GCDHQ92947 438 aaPredicted RBP17.91■□□□□ 0.46
VPS28-208ENST00000527797 YIPF5Q969M3 257 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 TRIM63Q969Q1 353 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 SLAMF9Q96A28 289 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 MRPL24Q96A35 216 aaKnown RBP17.91■□□□□ 0.46
VPS28-208ENST00000527797 MRPS24Q96EL2 167 aaKnown RBP17.91■□□□□ 0.46
VPS28-208ENST00000527797 ZNF442Q9H7R0 627 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 AUNIPQ9H7T9 357 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 MSL2Q9HCI7 577 aa17.91■□□□□ 0.46
VPS28-208ENST00000527797 A0A0A6YYD4 124 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 LINC00854A0A1B0GVQ3 168 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 J3QT63 122 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 LANCL1O43813 399 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 SFTPBP07988 381 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 PRSS3P35030 304 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 MZT1Q08AG7 82 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 IL24Q13007 206 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 ZNF57Q68EA5 555 aaPredicted RBP17.9■□□□□ 0.46
VPS28-208ENST00000527797 OSR2Q8N2R0 312 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 OR10AD1Q8NGE0 317 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 OR52I2Q8NH67 350 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 MRPL37Q9BZE1 423 aaKnown RBP17.9■□□□□ 0.46
VPS28-208ENST00000527797 TBC1D24Q9ULP9 559 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 NBEAQ8NFP9 2946 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 A0A1B0GWJ7 208 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 PLSCR5A0PG75 271 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 VSTM5A8MXK1 200 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 TRAPPC2LH3BP13 241 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 SYNGR1O43759 233 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 CD3EP07766 207 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 MPZP25189 248 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 ZNF260Q3ZCT1 412 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 CDNFQ49AH0 187 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 ADAM5Q6NVV9 412 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 WDR86Q86TI4 376 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 Q96M66 194 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 PCNX1Q96RV3 2341 aa17.9■□□□□ 0.46
VPS28-208ENST00000527797 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.89■□□□□ 0.45
VPS28-208ENST00000527797 SOCS1O15524 211 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 ASAH1Q13510 395 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 BEX5Q5H9J7 111 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 DNM1P46Q6ZS02 220 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 ZNF843Q8N446 348 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 SCCPDHQ8NBX0 429 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 Q8NFD4 153 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 AQP3Q92482 292 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 RAB3CQ96E17 227 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 ZMAT3Q9HA38 289 aaKnown RBP17.89■□□□□ 0.45
VPS28-208ENST00000527797 MTCH1Q9NZJ7 389 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 TAAR3PQ9P1P4 343 aa17.89■□□□□ 0.45
VPS28-208ENST00000527797 ESPL1Q14674 2120 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 MEIOCA2RUB1 952 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 WIPF3A6NGB9 483 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 F5H5P2 479 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 AKR7A2O43488 359 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 GRPP07492 148 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 BCL3P20749 454 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 GDNFP39905 211 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms