RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 UBR3Q6ZT12 1888 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 PCDH11XQ9BZA7 1347 aa2.67□□□□□ -1.98
CD44-223ENST00000526553 TNRC6CQ9HCJ0 1690 aaKnown RBP2.66□□□□□ -1.98
CD44-223ENST00000526553 ARFGEF1Q9Y6D6 1849 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 A0A0A6YYD5 115 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 A0A1W2PP18 115 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 HSBP1L1C9JCN9 74 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 C11orf94C9JXX5 98 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 TNFRSF11BO00300 401 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 ALOX12BO75342 701 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 ZMPSTE24O75844 475 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 LOXP28300 417 aaPredicted RBP2.66□□□□□ -1.98
CD44-223ENST00000526553 PMELP40967 661 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 KCNJ3P48549 501 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 HCCSP53701 268 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 TNNC1P63316 161 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 PAFAH1B2P68402 229 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 IFITM3Q01628 133 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 PSG3Q16557 428 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 THOC7Q6I9Y2 204 aaKnown RBP2.66□□□□□ -1.98
CD44-223ENST00000526553 SLC30A8Q8IWU4 369 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 OR51A7Q8NH64 312 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 COQ8AQ8NI60 647 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 LGALS14Q8TCE9 139 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 ZFAND1Q8TCF1 268 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 TMEM234Q8WY98 164 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 RDH12Q96NR8 316 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 NAPGQ99747 312 aaPredicted RBP2.66□□□□□ -1.98
CD44-223ENST00000526553 KCNS3Q9BQ31 491 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 PLA2G2FQ9BZM2 168 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 WDR55Q9H6Y2 383 aaPredicted RBP2.66□□□□□ -1.98
CD44-223ENST00000526553 VAPAQ9P0L0 249 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 CASP8AP2Q9UKL3 1982 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 PDE4DIPQ5VU43 2346 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 BRCA1P38398 1863 aaKnown RBP2.66□□□□□ -1.98
CD44-223ENST00000526553 KCPQ6ZWJ8 1503 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 USP54Q70EL1 1684 aa2.66□□□□□ -1.98
CD44-223ENST00000526553 KIF13BQ9NQT8 1826 aa2.65□□□□□ -1.98
CD44-223ENST00000526553 C4BP0C0L5 1744 aa2.65□□□□□ -1.98
CD44-223ENST00000526553 KTN1Q86UP2 1357 aaKnown RBP2.65□□□□□ -1.98
CD44-223ENST00000526553 ANKRD36BQ8N2N9 1353 aa2.65□□□□□ -1.98
CD44-223ENST00000526553 IGHV2OR16-5A0A0B4J2B6 119 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 IGHV1OR15-9A0A0B4J2B8 117 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 A0A0U1RQV1 116 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 LINC01619G3V211 115 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 BPY2O14599 106 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 MYL12BO14950 172 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 SLC35G6P0C7Q6 338 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 TLX1NBP0CAT3 122 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 THRAP10827 490 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 ZNF823P16415 610 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 CD151P48509 253 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 DNASE1L1P49184 302 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 UBE2E1P51965 193 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 GFERP55789 205 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 ATP5J2P56134 94 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 TAS2R46P59540 309 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 ESRRGP62508 458 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 RPL23P62829 140 aaKnown RBP2.65□□□□□ -1.99
CD44-223ENST00000526553 RPL31P62899 125 aaKnown RBP2.65□□□□□ -1.99
CD44-223ENST00000526553 SLC35A1P78382 337 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 PPIDQ08752 370 aaKnown RBP2.65□□□□□ -1.99
CD44-223ENST00000526553 OR1Q1Q15612 314 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 FAM78AQ5JUQ0 283 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 CDKL3Q8IVW4 592 aaPredicted RBP2.65□□□□□ -1.99
CD44-223ENST00000526553 TCAIMQ8N3R3 496 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 OR5W2Q8NH69 310 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 OR1S1Q8NH92 325 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 CACNG8Q8WXS5 425 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 CDKL2Q92772 493 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 RERGQ96A58 199 aaPredicted RBP2.65□□□□□ -1.99
CD44-223ENST00000526553 TMIGD2Q96BF3 282 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 PDXPQ96GD0 296 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 UBE2E2Q96LR5 201 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 ZNF382Q96SR6 550 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 CTRCQ99895 268 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 HINT2Q9BX68 163 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 OR51B5Q9H339 312 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 STMN3Q9NZ72 180 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 ZNRD1Q9P1U0 126 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 SIGLEC9Q9Y336 463 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 RBMX2Q9Y388 322 aaKnown RBP2.65□□□□□ -1.99
CD44-223ENST00000526553 KLF12Q9Y4X4 402 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 UBIAD1Q9Y5Z9 338 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 TMEM14AQ9Y6G1 99 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 LRP4O75096 1905 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 FAM208AQ9UK61 1670 aaKnown RBP2.65□□□□□ -1.99
CD44-223ENST00000526553 PIKFYVEQ9Y2I7 2098 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 EVC2Q86UK5 1308 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 TTC21AQ8NDW8 1320 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 MON2Q7Z3U7 1717 aa2.65□□□□□ -1.99
CD44-223ENST00000526553 NFAT5O94916 1531 aa2.64□□□□□ -1.99
CD44-223ENST00000526553 SMIM26A0A096LP01 95 aa2.64□□□□□ -1.99
CD44-223ENST00000526553 IGKV1-8A0A0C4DH67 115 aa2.64□□□□□ -1.99
CD44-223ENST00000526553 POLR3GO15318 223 aaPredicted RBP2.64□□□□□ -1.99
CD44-223ENST00000526553 B4GALT5O43286 388 aa2.64□□□□□ -1.99
CD44-223ENST00000526553 GCM2O75603 506 aaPredicted RBP2.64□□□□□ -1.99
CD44-223ENST00000526553 REM1O75628 298 aa2.64□□□□□ -1.99
CD44-223ENST00000526553 NPPAP01160 153 aa2.64□□□□□ -1.99
CD44-223ENST00000526553 OR5AL1P0C617 328 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms