RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 CRYM-AS1A6NIL9 109 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 DHRS7CA6NNS2 312 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 GRXCR1A8MXD5 290 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 SELPP16109 830 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 GABRA3P34903 492 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 NTHL1P78549 312 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 PRICKLE4Q2TBC4 344 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 TCEAL5Q5H9L2 206 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 ASTLQ6HA08 431 aaPredicted RBP7.38□□□□□ -1.23
CSMD1-213ENST00000523488 PLXDC2Q6UX71 529 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF550Q7Z398 422 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 EXTL1Q92935 676 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 URM1Q9BTM9 101 aaKnown RBP7.38□□□□□ -1.23
CSMD1-213ENST00000523488 MRPL22Q9NWU5 206 aaKnown RBP7.38□□□□□ -1.23
CSMD1-213ENST00000523488 C1orf123Q9NWV4 160 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 KLHL13Q9P2N7 655 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 FAM230AA0A1W2PPH8 454 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 CBY3A6NI87 242 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 CCL16O15467 120 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 MBPP02686 304 aaPredicted RBP7.38□□□□□ -1.23
CSMD1-213ENST00000523488 PEBP1P30086 187 aaKnown RBP7.38□□□□□ -1.23
CSMD1-213ENST00000523488 WASP42768 502 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 SLC11A1P49279 550 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 HLA-DRB3P79483 266 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 TRA2AQ13595 282 aaKnown RBP eCLIP7.38□□□□□ -1.23
CSMD1-213ENST00000523488 IL13RA2Q14627 380 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 MEP1BQ16820 701 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 NKAIN1Q4KMZ8 207 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF774Q6NX45 483 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 C17orf99Q6UX52 265 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF66Q6ZN08 573 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 LRP11Q86VZ4 500 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 C20orf196Q8IYI0 205 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 OR10A7Q8NGE5 316 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 CLDND2Q8NHS1 167 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 P2RX4Q99571 388 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 SGIP1Q9BQI5 828 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 TM2D1Q9BX74 207 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 CHODLQ9H9P2 273 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 LIPGQ9Y5X9 500 aa7.38□□□□□ -1.23
CSMD1-213ENST00000523488 C20orf202A1L168 122 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 MSTNO14793 375 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 SNRNP200O75643 2136 aaKnown RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 CYB5R3P00387 301 aaPredicted RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 MMP9P14780 707 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 TMEM11P17152 192 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 RPL23AP62750 156 aaKnown RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 TAF9Q16594 264 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 OTPQ5XKR4 325 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 FAM180AQ6UWF9 173 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 TCF24Q7RTU0 167 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 ATG4DQ86TL0 474 aaPredicted RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 OR2G3Q8NGZ4 309 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 BOD1Q96IK1 185 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 PARD6AQ9NPB6 346 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 FBXO34Q9NWN3 711 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 C10orf142B7Z368 130 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 BRS3P32247 399 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 PTTG1IPP53801 180 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 UBE2NP61088 152 aaKnown RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 RIPPLY2Q5TAB7 128 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 COX15Q7KZN9 410 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 C11orf42Q8N5U0 333 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 CYB561D1Q8N8Q1 229 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 CDRT4Q8N9R6 151 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 SLC24A4Q8NFF2 622 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 FOXN4Q96NZ1 517 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 FKBP11Q9NYL4 201 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 PTRH2Q9Y3E5 179 aaKnown RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 ATG2BQ96BY7 2078 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 A0A1W2PQ45 241 aaPredicted RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 A0A1W2PQY0 241 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 A0A1W2PRU2 124 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 E5RGE8 158 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 NDUFS8O00217 210 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 PLRG1O43660 514 aaKnown RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 OR4A8P0C604 315 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 JMJD7P0C870 316 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 GLRA1P23415 457 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 EMP2P54851 167 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 SELENOTP62341 195 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 RAB11AP62491 216 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 ZFP62Q8NB50 900 aaPredicted RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 OR13G1Q8NGZ3 307 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 TMEM37Q8WXS4 190 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 ERGIC1Q969X5 290 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 PPP1R14AQ96A00 147 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 CCDC74BQ96LY2 380 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 HIST1H2AAQ96QV6 131 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 FAAP24Q9BTP7 215 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 ST6GALNAC5Q9BVH7 336 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 GPR35Q9HC97 309 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 DNAJC4Q9NNZ3 241 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 LANCL2Q9NS86 450 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 TM7SF3Q9NS93 570 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 APOBEC3BQ9UH17 382 aaKnown RBP7.37□□□□□ -1.23
CSMD1-213ENST00000523488 HHLA2Q9UM44 414 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 NSG2Q9Y328 171 aa7.37□□□□□ -1.23
CSMD1-213ENST00000523488 RNF115Q9Y4L5 304 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms