RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 LTBP3Q9NS15 1303 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 ERI3O43414 337 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 OPN1LWP04000 364 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 GALR1P47211 349 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 UBE2G2P60604 165 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 RANP62826 216 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 FHL1Q13642 323 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 SP6Q3SY56 376 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 OR4N5Q8IXE1 308 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 OR5L1Q8NGL2 311 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 OR5H2Q8NGV7 314 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 SDF2Q99470 211 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 CST9LQ9H4G1 147 aa10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF701Q9NV72 531 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-213ENST00000511496 TNS1Q9HBL0 1735 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 TIMP1P01033 207 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 PDLIM4P50479 330 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 MEP1BQ16820 701 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 KLHDC8AQ8IYD2 350 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 BCL2L2Q92843 193 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 GJD4Q96KN9 370 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 RBPJLQ9UBG7 517 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 LAMTOR2Q9Y2Q5 125 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 COCHO43405 550 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 CDKN1AP38936 164 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 TMEM241Q24JQ0 296 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF506Q5JVG8 444 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 AGBL5Q8NDL9 886 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 ABHD3Q8WU67 409 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 MOB3AQ96BX8 217 aa10.63□□□□□ -0.71
LIMCH1-213ENST00000511496 SCN3AQ9NY46 2000 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 SLC33A1O00400 549 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 AMY2BP19961 511 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 HNRNPA3P51991 378 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ZP2Q05996 745 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 C1QL3Q5VWW1 255 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 CPEB2Q7Z5Q1 589 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 LINC01551Q86U37 167 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF845Q96IR2 970 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 SLC2A9Q9NRM0 540 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 TMEM106BQ9NUM4 274 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 TMEM242Q9NWH2 141 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 PLA2G3Q9NZ20 509 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF780BQ9Y6R6 833 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 H2BFMP0C1H6 154 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 PNRC1Q12796 327 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ARFRP1Q13795 201 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 RTP5Q14D33 572 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 Q7L0L9 218 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 MARCH3Q86UD3 253 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 OR5AR1Q8NGP9 310 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 CLDND2Q8NHS1 167 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF596Q8TC21 504 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 FGGYQ96C11 551 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 RPUSD4Q96CM3 377 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 SCGB3A2Q96PL1 93 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 SLC22A12Q96S37 553 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 NICN1Q9BSH3 213 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 VN1R1Q9GZP7 353 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 OR6C3Q9NZP0 311 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 YIPF1Q9Y548 306 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 COX11Q9Y6N1 276 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 LTBP4Q8N2S1 1624 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 H7BYZ3 331 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 FGF17O60258 216 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF217O75362 1048 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 PFN1P07737 140 aaKnown RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 AKR1A1P14550 325 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 PTGER4P35408 488 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 THPOP40225 353 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 RUNX1Q01196 453 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 DUSP8Q13202 625 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 FAM90A2PQ658T7 463 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 WDFY1Q8IWB7 410 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 OR13G1Q8NGZ3 307 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF689Q96CS4 500 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 MRGPRX1Q96LB2 322 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 OR10A5Q9H207 317 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 RRAGCQ9HB90 399 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 SDF2L1Q9HCN8 221 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 ENTPD2Q9Y5L3 495 aa10.62□□□□□ -0.71
LIMCH1-213ENST00000511496 NSG1A0A0A6YYJ2 146 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 CCDC163A0A0D9SF12 145 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 ETV2O00321 342 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 ACOT6Q3I5F7 207 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 MORN1Q5T089 497 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 SAXO1Q8IYX7 474 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 OR56B2PQ8NGI1 322 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 PTPMT1Q8WUK0 201 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 ASB5Q8WWX0 329 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 OR6C1Q96RD1 312 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 HSPB9Q9BQS6 159 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 B9D1Q9UPM9 204 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 MBLAC1A4D2B0 266 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 LMX1BO60663 402 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 EFNA3P52797 238 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 TMEM41BQ5BJD5 291 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 KREMEN2Q8NCW0 462 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 BTF3L4Q96K17 158 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 CLEC4EQ9ULY5 219 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms