RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PAQR8Q8TEZ7 354 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SCGB3A2Q96PL1 93 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF385AQ96PM9 386 aaKnown RBP14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 OCIAD1Q9NX40 245 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GHRLQ9UBU3 117 aa14.08□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 A0A0U1RQV5 110 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 F5H5K5 113 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FAHP16930 419 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 OR3A2P47893 321 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SLC6A9P48067 706 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CSNK1A1P48729 337 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 RSPO4Q2I0M5 234 aaPredicted RBP14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 NSUN5P2Q63ZY6 315 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SLC16A14Q7RTX9 510 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PPP1R3BQ86XI6 285 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FAM219AQ8IW50 185 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF565Q8N9K5 539 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PNLDC1Q8NA58 520 aaKnown RBP14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 POC1AQ8NBT0 407 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DEFB124Q8NES8 71 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF775Q96BV0 537 aaPredicted RBP14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TM2D1Q9BX74 207 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 NELFAQ9H3P2 528 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 EHFQ9NZC4 300 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DHRS3O75911 302 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 S100A8P05109 93 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SRSF3P84103 164 aaKnown RBP14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 MST1LQ2TV78 715 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 NKAPLQ5M9Q1 402 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DRAM2Q6UX65 266 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GJC3Q8NFK1 279 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 OR51F2Q8NH61 342 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TMED6Q8WW62 240 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 C2orf50Q96LR7 162 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 AQP10Q96PS8 301 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PRRX2Q99811 253 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 OR51M1Q9H341 326 aa14.07□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 IGKV1D-8A0A087WSZ0 117 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 IGHV3-15A0A0B4J1V0 119 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TP53I11O14683 189 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SERPINA2P20848 420 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 OTX1P32242 354 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TAS2R46P59540 309 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 AIMP2Q13155 320 aaKnown RBP14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 RAB32Q13637 225 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PLEKHN1Q494U1 663 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PUSL1Q8N0Z8 303 aaKnown RBP14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 NANPQ8TBE9 248 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 RNF141Q8WVD5 230 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DUSP23Q9BVJ7 150 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PROK2Q9HC23 129 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SPAARA0A1B0GVQ0 90 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GPR31O00270 319 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FCGR2AP12318 317 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GUCA2BQ16661 112 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HFEQ30201 348 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TMEM123Q8N131 208 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 LRRC18Q8N456 261 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 OR4A4PQ8NGN8 299 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 UCN2Q96RP3 112 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CHST5Q9GZS9 411 aa14.06□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 AHCTF1Q8WYP5 2266 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 LOC102723996A0A087X1L8 192 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 MSTNO14793 375 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 S100A9P06702 114 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DBHP09172 617 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PTGER4P35408 488 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF84P51523 738 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 C10orf91Q5T1B1 145 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TMEM200AQ86VY9 491 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SFT2D1Q8WV19 159 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PP6455Q8WZ26 134 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HAS2Q92819 552 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 EMG1Q92979 244 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PIGTQ969N2 578 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 NTNG2Q96CW9 530 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SLC5A7Q9GZV3 580 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 METTL8Q9H825 291 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 MCTS1Q9ULC4 181 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PIGLQ9Y2B2 252 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PCDHGA1Q9Y5H4 931 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 KIAA1549Q9HCM3 1950 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 A0A087WZY1 265 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FIGNL2A6NMB9 653 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SERPINE3A8MV23 424 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CA11O75493 328 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CSTBP04080 98 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SFTPCP11686 197 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF585AQ6P3V2 769 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ARL11Q969Q4 196 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GNRHR2Q96P88 292 aa14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 TSNAXQ99598 290 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DHHO43323 396 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZIC3O60481 467 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CCL3P10147 92 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 NR2C1P13056 603 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SURF2Q15527 256 aaPredicted RBP14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 C6orf201Q7Z4U5 140 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 LDLRAD3Q86YD5 345 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZIC4Q8N9L1 334 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms