RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 KLHL22Q53GT1 634 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 ARSJQ5FYB0 599 aaPredicted RBP13.22□□□□□ -0.29
VIM-208ENST00000497849 KDM4DQ6B0I6 523 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 FAM185AQ8N0U4 392 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 OR10Z1Q8NGY1 313 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 DPF1Q92782 380 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 MYDGFQ969H8 173 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 HEXA-AS1Q9H8Q6 139 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 RPRD1BQ9NQG5 326 aaKnown RBP13.22□□□□□ -0.29
VIM-208ENST00000497849 KRT84Q9NSB2 600 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 C19orf12Q9NSK7 152 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 IL20Q9NYY1 176 aa13.22□□□□□ -0.29
VIM-208ENST00000497849 AKR7A2O43488 359 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 PSKH1P11801 424 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 COX7A1P24310 79 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 EPHA2P29317 976 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 CRISP1P54107 249 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 AQP4P55087 323 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 LGALS4P56470 323 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 FAM3AP98173 230 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 SLC16A9Q7RTY1 509 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 ZNRF1Q8ND25 227 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 OR52L1Q8NGH7 329 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 OR4K13Q8NH42 304 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 DNAJC9Q8WXX5 260 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 ZNF184Q99676 751 aaPredicted RBP13.21□□□□□ -0.29
VIM-208ENST00000497849 FN3KQ9H479 309 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 OPA3Q9H6K4 179 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 N6AMT1Q9Y5N5 214 aa13.21□□□□□ -0.29
VIM-208ENST00000497849 GLCEO94923 617 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 HLA-DQA2P01906 255 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 CCDC159P0C7I6 412 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 HIST1H1CP16403 213 aaKnown RBP13.2□□□□□ -0.3
VIM-208ENST00000497849 HSPA13P48723 471 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 ALDH3A2P51648 485 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 PRKXP51817 358 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 DOC2BQ14184 412 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 LDLRAD2Q5SZI1 272 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 CYB561A3Q8NBI2 242 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 MUC7Q8TAX7 377 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 TEX47Q8TBZ9 253 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 RPS4Y2Q8TD47 263 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 RPL3LQ92901 407 aaKnown RBP13.2□□□□□ -0.3
VIM-208ENST00000497849 GPR61Q9BZJ8 451 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 RIBC2Q9H4K1 309 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 USE1Q9NZ43 259 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 ZNF222Q9UK12 451 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 PITPNC1Q9UKF7 332 aa13.2□□□□□ -0.3
VIM-208ENST00000497849 IGKV1D-17A0A075B6S4 117 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 LCE6AA0A183 80 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 OR6C68A6NDL8 312 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 OR2AT4A6NND4 320 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 F2RL2O00254 374 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 XRCC2O43543 280 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 RHBDL1O75783 438 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 RENP00797 406 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 ALDOBP05062 364 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 ALPLP05186 524 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 LMO1P25800 156 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 NOS3P29474 1203 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 KLHL12Q53G59 568 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 RPL13AP3Q6NVV1 102 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 ETV3LQ6ZN32 361 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 MRPL41Q8IXM3 137 aaKnown RBP13.19□□□□□ -0.3
VIM-208ENST00000497849 TMEM185AQ8NFB2 350 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 ABCB10Q9NRK6 738 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 NLKQ9UBE8 527 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 KCNG2Q9UJ96 466 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 RHBDD3Q9Y3P4 386 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 LSM4Q9Y4Z0 139 aaKnown RBP13.19□□□□□ -0.3
VIM-208ENST00000497849 ORC6Q9Y5N6 252 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 HYDINQ4G0P3 5121 aa13.19□□□□□ -0.3
VIM-208ENST00000497849 STARD9Q9P2P6 4700 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 M0R129 80 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 ARPC3O15145 178 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 CLIC3O95833 236 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 JUNBP17275 347 aaPredicted RBP13.18□□□□□ -0.3
VIM-208ENST00000497849 GABRA2P47869 451 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 CDK5Q00535 292 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.18□□□□□ -0.3
VIM-208ENST00000497849 PTGES3Q15185 160 aaKnown RBP13.18□□□□□ -0.3
VIM-208ENST00000497849 SSX2Q16385 188 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 DMRTC1Q5HYR2 192 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 C10orf99Q6UWK7 81 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 CENPVQ7Z7K6 275 aaPredicted RBP13.18□□□□□ -0.3
VIM-208ENST00000497849 SDR9C7Q8NEX9 313 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 OR2T33Q8NG76 320 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 SGK3Q96BR1 496 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 KCNJ15Q99712 375 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 FGF23Q9GZV9 251 aaPredicted RBP13.18□□□□□ -0.3
VIM-208ENST00000497849 LRRC42Q9Y546 428 aa13.18□□□□□ -0.3
VIM-208ENST00000497849 CSMD3Q7Z407 3707 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 hCG_38984A0A1B0GV85 526 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 ZFPL1O95159 310 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 PSG2P11465 335 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 ZNF823P16415 610 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 CCL3L1P16619 93 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 GNALP38405 381 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 SLC25A1P53007 311 aa13.17□□□□□ -0.3
VIM-208ENST00000497849 TMEM200BQ69YZ2 307 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms