RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CHID1Q9BWS9 393 aa9.45□□□□□ -0.9
COL6A3-213ENST00000493475 MEGF9Q9H1U4 602 aa9.45□□□□□ -0.9
COL6A3-213ENST00000493475 PLEKHA1Q9HB21 404 aa9.45□□□□□ -0.9
COL6A3-213ENST00000493475 ZNF319Q9P2F9 582 aa9.45□□□□□ -0.9
COL6A3-213ENST00000493475 IKZF2Q9UKS7 526 aa9.45□□□□□ -0.9
COL6A3-213ENST00000493475 GTF2A1LQ9UNN4 478 aa9.45□□□□□ -0.9
COL6A3-213ENST00000493475 PIGLQ9Y2B2 252 aa9.45□□□□□ -0.9
COL6A3-213ENST00000493475 IGKV1D-17A0A075B6S4 117 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 AQP12BA6NM10 295 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 J3QT63 122 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 DHRS3O75911 302 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 NRASP01111 189 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 SELLP14151 372 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 AMY2BP19961 511 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 ALOX5APP20292 161 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 PRDX2P32119 198 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 HAAOP46952 286 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 ARHGDIBP52566 201 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 ELF3P78545 371 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-213ENST00000493475 SNAPC1Q16533 368 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 CLVS2Q5SYC1 327 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 BCL2L15Q5TBC7 163 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 C1QL4Q86Z23 238 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 AQP12AQ8IXF9 295 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 ZNF679Q8IYX0 411 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 KLHDC1Q8N7A1 406 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 POC1AQ8NBT0 407 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 RPS4Y2Q8TD47 263 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 NKX3-1Q99801 234 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-213ENST00000493475 PBOV1Q9GZY1 135 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 GPR84Q9NQS5 396 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-213ENST00000493475 SLC7A11Q9UPY5 501 aa9.44□□□□□ -0.9
COL6A3-213ENST00000493475 RFPL4AA6NLU0 287 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 LOC110117498-PIK3R3F6TDL0 507 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 RFPL4AL1F8VTS6 287 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 DLGAP1O14490 977 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 RHBDL1O75783 438 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 DNAJC8O75937 253 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-213ENST00000493475 VSIG10L2P0DP72 767 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 EFNB2P52799 333 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 OR12D2P58182 307 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 ROM1Q03395 351 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 PRB3Q04118 309 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-213ENST00000493475 APOFQ13790 326 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 FBLN7Q53RD9 439 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 ACP7Q6ZNF0 438 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 GDPD3Q7L5L3 318 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 KRT74Q7RTS7 529 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 PIGWQ7Z7B1 504 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 PNKDQ8N490 385 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 OR2T27Q8NH04 317 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 OR51E1Q8TCB6 317 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 CAPSLQ8WWF8 208 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 MALSU1Q96EH3 234 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 AKR1E2Q96JD6 320 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 LYZL4Q96KX0 146 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 CNN2Q99439 309 aaKnown RBP9.43□□□□□ -0.9
COL6A3-213ENST00000493475 PRSS22Q9GZN4 317 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 PPP1R3EQ9H7J1 279 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 FAM206AQ9NX38 181 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 NUFIP1Q9UHK0 495 aaKnown RBP9.43□□□□□ -0.9
COL6A3-213ENST00000493475 ENOPH1Q9UHY7 261 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 GLS2Q9UI32 602 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 ZNF222Q9UK12 451 aa9.43□□□□□ -0.9
COL6A3-213ENST00000493475 TBL2Q9Y4P3 447 aaKnown RBP9.43□□□□□ -0.9
COL6A3-213ENST00000493475 DHRS7CA6NNS2 312 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 PIN1P1O15428 100 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 NOS1APO75052 506 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-213ENST00000493475 FBXO24O75426 580 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 CYB5AP00167 134 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 SERPINA3P01011 423 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 RBP4P02753 201 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 COX7A1P24310 79 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 CDK5Q00535 292 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 IL18R1Q13478 541 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 FAM189A2Q15884 450 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 ZBTB49Q6ZSB9 765 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 TRPM8Q7Z2W7 1104 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 MKXQ8IYA7 352 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 ASCC1Q8N9N2 400 aaKnown RBP9.42□□□□□ -0.9
COL6A3-213ENST00000493475 OR8B4Q96RC9 309 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 ADI1Q9BV57 179 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 ELL3Q9HB65 397 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-213ENST00000493475 SLC25A19Q9HC21 320 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 PAPOLBQ9NRJ5 636 aaKnown RBP9.42□□□□□ -0.9
COL6A3-213ENST00000493475 C19orf12Q9NSK7 152 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 VNN3Q9NY84 501 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 TVP23BQ9NYZ1 205 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 DNAJB9Q9UBS3 223 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 OR14J1Q9UGF5 321 aa9.42□□□□□ -0.9
COL6A3-213ENST00000493475 TET2Q6N021 2002 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-213ENST00000493475 VGLL3A8MV65 326 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 ZNF670-ZNF695F2Z2N8 137 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 F2RL2O00254 374 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 GATBO75879 557 aaKnown RBP9.41□□□□□ -0.9
COL6A3-213ENST00000493475 TK1P04183 234 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 ARG1P05089 322 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 CHRM2P08172 466 aa9.41□□□□□ -0.9
COL6A3-213ENST00000493475 MRPL3P09001 348 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms