RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 TSPAN9O75954 239 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 NRASP01111 189 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 TGFBR2P37173 567 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 CEBPDP49716 269 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-211ENST00000491233 CXCR4P61073 352 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 EGR3Q06889 387 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 ZNF684Q5T5D7 378 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 BCL2L15Q5TBC7 163 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 ZNF322Q6U7Q0 402 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-211ENST00000491233 PLEKHG7Q6ZR37 379 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 SLC35F2Q8IXU6 374 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 CD177Q8N6Q3 437 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 BEND2Q8NDZ0 799 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 OR5D13Q8NGL4 314 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 OR5K1Q8NHB7 308 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 UTP4Q969X6 686 aaKnown RBP11.13□□□□□ -0.63
COL6A3-211ENST00000491233 APOL4Q9BPW4 351 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 PPA2Q9H2U2 334 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 ADGRL4Q9HBW9 690 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 KRT84Q9NSB2 600 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 RASL12Q9NYN1 266 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 SF3B6Q9Y3B4 125 aaKnown RBP11.13□□□□□ -0.63
COL6A3-211ENST00000491233 R4GMQ9 66 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 RFPL4AA6NLU0 287 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 RFPL4AL1F8VTS6 287 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 MITFO75030 526 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-211ENST00000491233 DNAJC8O75937 253 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-211ENST00000491233 PGA5P0DJD9 388 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 HAAOP46952 286 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 ESRRGP62508 458 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 CLVS2Q5SYC1 327 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 SLX4IPQ5VYV7 408 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 MEPCEQ7L2J0 689 aaKnown RBP11.12□□□□□ -0.63
COL6A3-211ENST00000491233 ZNF573Q86YE8 665 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 BATF2Q8N1L9 274 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 TCEANCQ8N8B7 351 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 OR51G2Q8NGK0 314 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 RORBQ92753 470 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 SSX3Q99909 188 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 OR52A1Q9UKL2 312 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 POLDIP2Q9Y2S7 368 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 V9GYS6 101 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 DSCAML1Q8TD84 2053 aa11.12□□□□□ -0.63
COL6A3-211ENST00000491233 A0A1B0GTI1 187 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 PQLC2LA1A4F0 135 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 ZNF670-ZNF695F2Z2N8 137 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 SLC1A7O00341 560 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 NXPH2O95156 264 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 PAX6P26367 422 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 EPHA2P29317 976 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 LY6EQ16553 131 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 LRRC75BQ2VPJ9 315 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 AADACL4Q5VUY2 407 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 NXNL2Q5VZ03 156 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 TMEM42Q69YG0 159 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 C12orf73Q69YU5 71 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 SLC35E4Q6ICL7 350 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 ASRGL1Q7L266 308 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 MKXQ8IYA7 352 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 ELMOD2Q8IZ81 293 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 ZNF561Q8N587 486 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 OR14K1Q8NGZ2 314 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 TMEM163Q8TC26 289 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 MNTQ99583 582 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 H2AFY2Q9P0M6 372 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-211ENST00000491233 OR14J1Q9UGF5 321 aa11.11□□□□□ -0.63
COL6A3-211ENST00000491233 MRM2Q9UI43 246 aaKnown RBP11.11□□□□□ -0.63
COL6A3-211ENST00000491233 A0A1W2PPH5 198 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 A6NIN4 97 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 ZAR1LA6NP61 321 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 DLGAP1O14490 977 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 CCL3L1P16619 93 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 COX7A1P24310 79 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 GABRA5P31644 462 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 PRDX2P32119 198 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 BMXP51813 675 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 RPL31P62899 125 aaKnown RBP11.1□□□□□ -0.63
COL6A3-211ENST00000491233 ZNF273Q14593 569 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 ATP6AP1Q15904 470 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 C2orf68Q2NKX9 166 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 SSX6Q7RTT6 188 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 CALHM1Q8IU99 346 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 GID4Q8IVV7 300 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 OR4M1Q8NGD0 313 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 TRMT10AQ8TBZ6 339 aaKnown RBP11.1□□□□□ -0.63
COL6A3-211ENST00000491233 BCAS4Q8TDM0 211 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 AJUBAQ96IF1 538 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 IL4I1Q96RQ9 567 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 NRIP2Q9BQI9 281 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 GABARAPL1Q9H0R8 117 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 FAM234AQ9H0X4 552 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 CLN6Q9NWW5 311 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 USE1Q9NZ43 259 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 SLC22A13Q9Y226 551 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 SIGLEC9Q9Y336 463 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 SNX5Q9Y5X3 404 aa11.1□□□□□ -0.63
COL6A3-211ENST00000491233 DHRS7CA6NNS2 312 aa11.09□□□□□ -0.63
COL6A3-211ENST00000491233 G3V2T6 193 aa11.09□□□□□ -0.63
COL6A3-211ENST00000491233 NOS1APO75052 506 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-211ENST00000491233 RPP14O95059 124 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms