RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 OR51A4Q8NGJ6 313 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 TMIGD2Q96BF3 282 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 ADAT3Q96EY9 351 aaPredicted RBP14.96□□□□□ -0.01
COL9A3-214ENST00000490398 WDFY2Q96P53 400 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 ALG8Q9BVK2 526 aa14.96□□□□□ -0.01
COL9A3-214ENST00000490398 DOCK11Q5JSL3 2073 aa14.96□□□□□ -0.02
COL9A3-214ENST00000490398 FAM230AA0A1W2PPH8 454 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 F8VVB4 439 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 F8VWA3 439 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 J3QT63 122 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 SIGLEC5O15389 551 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 NDUFB3O43676 98 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 ACAA1P09110 424 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-214ENST00000490398 PGA5P0DJD9 388 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 FDX2Q6P4F2 183 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 ACP7Q6ZNF0 438 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 RNF144BQ7Z419 303 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 CD177Q8N6Q3 437 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 ZNRF1Q8ND25 227 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 ZNF671Q8TAW3 534 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 CNIH3Q8TBE1 160 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 ADI1Q9BV57 179 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 MS4A7Q9GZW8 240 aaPredicted RBP14.95□□□□□ -0.02
COL9A3-214ENST00000490398 PLEKHA1Q9HB21 404 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 ERVK13-1Q9NX77 482 aa14.95□□□□□ -0.02
COL9A3-214ENST00000490398 IGKV1-9A0A0C4DH69 117 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 CENPVL3A0A0U1RRI6 287 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 OR4C45A6NMZ5 311 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 MPZL2O60487 215 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 TOX4O94842 621 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 INMTO95050 263 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 HTR1AP08908 422 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 UBCP0CG48 685 aaKnown RBP14.94□□□□□ -0.02
COL9A3-214ENST00000490398 MPZP25189 248 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 UBA52P62987 128 aaKnown RBP14.94□□□□□ -0.02
COL9A3-214ENST00000490398 ADARB1P78563 741 aaKnown RBP14.94□□□□□ -0.02
COL9A3-214ENST00000490398 GALEQ14376 348 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 ZNF691Q5VV52 312 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 C9orf139Q6ZV77 190 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 KCTD20Q7Z5Y7 419 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 ZNF573Q86YE8 665 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 PDZD9Q8IXQ8 264 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 ZNF555Q8NEP9 628 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 TAF15Q92804 592 aaKnown RBP eCLIP14.94□□□□□ -0.02
COL9A3-214ENST00000490398 FGGYQ96C11 551 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 Q96MT0 163 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 RDH12Q96NR8 316 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 NRIP2Q9BQI9 281 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 DCTN5Q9BTE1 182 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 CHST5Q9GZS9 411 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 DNTTIP1Q9H147 329 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 CNTD2Q9H8S5 307 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 MRPS18AQ9NVS2 196 aaKnown RBP14.94□□□□□ -0.02
COL9A3-214ENST00000490398 PCDHGB1Q9Y5G3 927 aa14.94□□□□□ -0.02
COL9A3-214ENST00000490398 NKX6-3A6NJ46 265 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 RFPL4AA6NLU0 287 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 SNTNA6NMZ2 147 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 RFPL4AL1F8VTS6 287 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 ECDO95905 644 aaPredicted RBP14.93□□□□□ -0.02
COL9A3-214ENST00000490398 LIPFP07098 398 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 LIMS3P0CW19 117 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 LIMS4P0CW20 117 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 ERVK11-1P61568 191 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 IL13RA1P78552 427 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 RAB40BQ12829 278 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 DEFB112Q30KQ8 113 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 Q8N7P7 452 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 PNLDC1Q8NA58 520 aaKnown RBP14.93□□□□□ -0.02
COL9A3-214ENST00000490398 CYGBQ8WWM9 190 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 H1FXQ92522 213 aaKnown RBP14.93□□□□□ -0.02
COL9A3-214ENST00000490398 LHX4Q969G2 390 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 SDSLQ96GA7 329 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 MTCH1Q9NZJ7 389 aa14.93□□□□□ -0.02
COL9A3-214ENST00000490398 SLC25A10Q9UBX3 287 aaPredicted RBP14.93□□□□□ -0.02
COL9A3-214ENST00000490398 RPL36Q9Y3U8 105 aaKnown RBP14.93□□□□□ -0.02
COL9A3-214ENST00000490398 DNAJC9-AS1A6NH13 148 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 NOS1APO75052 506 aaPredicted RBP14.92□□□□□ -0.02
COL9A3-214ENST00000490398 ISG15P05161 165 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 CCR9P51686 369 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 GTF2A1P52655 376 aaPredicted RBP14.92□□□□□ -0.02
COL9A3-214ENST00000490398 ALKBH1Q13686 389 aaKnown RBP14.92□□□□□ -0.02
COL9A3-214ENST00000490398 LRRC10Q5BKY1 277 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 TMEM244Q5VVB8 128 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 LAIR2Q6ISS4 152 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 FAM216AQ8WUB2 273 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 ZFAND2BQ8WV99 257 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 HES4Q9HCC6 221 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 FGF20Q9NP95 211 aaPredicted RBP14.92□□□□□ -0.02
COL9A3-214ENST00000490398 ONECUT1Q9UBC0 465 aa14.92□□□□□ -0.02
COL9A3-214ENST00000490398 NKX1-2Q9UD57 310 aaPredicted RBP14.92□□□□□ -0.02
COL9A3-214ENST00000490398 TRIM77I1YAP6 450 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 FADS2O95864 444 aaKnown RBP14.91□□□□□ -0.02
COL9A3-214ENST00000490398 GNAO1P09471 354 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 NDUFB7P17568 137 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 PRDX2P32119 198 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 ETV1P50549 477 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 FUT6P51993 359 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 ACTA2P62736 377 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 ACTG2P63267 376 aa14.91□□□□□ -0.02
COL9A3-214ENST00000490398 BAMBIQ13145 260 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms