RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 A0A0G2JMP0 313 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 A0A0X1KG70 313 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 FAM240AA0A1B0GVK7 77 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 TMEM72A0PK05 275 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 TVP23AA6NH52 213 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 C17orf51A8MQB3 221 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 K7EN84 100 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 MFNGO00587 321 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 RFXANKO14593 260 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 CNMDO75829 334 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 OR5AL1P0C617 328 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 RNASE2P10153 161 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 LIPCP11150 499 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 CD9P21926 228 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 TGFBR1P36897 503 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 IDH2P48735 452 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 XIAPP98170 497 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 ADIGQ0VDE8 80 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 DYNC1I2Q13409 638 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 BTN1A1Q13410 526 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 FAM53BQ14153 422 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 MAPRE2Q15555 327 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 TAL2Q16559 108 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 TTC32Q5I0X7 151 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 TBPL2Q6SJ96 375 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 SPINT4Q6UDR6 99 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 C16orf47Q6ZP98 133 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 PDPNQ86YL7 162 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 BBS7Q8IWZ6 715 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 RNF10Q8N5U6 811 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 OR52N1Q8NH53 320 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 ZNF420Q8TAQ5 688 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 CACNG8Q8WXS5 425 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 FRMD8P1Q9BZ68 369 aaPredicted RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 TBL1XR1Q9BZK7 514 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 ANKHQ9HCJ1 492 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 IL37Q9NZH6 218 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 DHCR7Q9UBM7 475 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 RWDD2AQ9UIY3 292 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 RAB22AQ9UL26 194 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 SLC7A11Q9UPY5 501 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 ORC6Q9Y5N6 252 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 V9GYY9 64 aa1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 RPRD2Q5VT52 1461 aaKnown RBP1.48□□□□□ -2.17
CCDC88A-212ENST00000474059 ELP1O95163 1332 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 TRIP11Q15643 1979 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 BAZ2AQ9UIF9 1905 aaKnown RBP1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 TRAV8-7A0A075B6U6 113 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 GSTTP1A0A1W2PQM5 241 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 SEC14L6B5MCN3 397 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 GATCO43716 136 aaKnown RBP1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 ALOX12BO75342 701 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 RHOCP08134 193 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 MPIP34949 423 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 P2RY2P41231 377 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 PSMB2P49721 201 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 RGS6P49758 472 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 IL5RAQ01344 420 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 LAMTOR4Q0VGL1 99 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 CDNFQ49AH0 187 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 ZNF678Q5SXM1 525 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 APOBEC3HQ6NTF7 200 aaKnown RBP1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 CASP12Q6UXS9 341 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 SETD3Q86TU7 594 aaPredicted RBP1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 FAM58AQ8N1B3 248 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 SLC26A10Q8NG04 563 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 OR4K2Q8NGD2 314 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 OR1P1Q8NH06 330 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 FAM57AQ8TBR7 257 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 ORAOV1Q8WV07 137 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 CIDECQ96AQ7 238 aaPredicted RBP1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 DERL3Q96Q80 235 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 PDCD1LG2Q9BQ51 273 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 UTP23Q9BRU9 249 aaKnown RBP1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 ZNF649Q9BS31 505 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 C1orf50Q9BV19 199 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 TMED9Q9BVK6 235 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 COA1Q9GZY4 146 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 PORCNQ9H237 461 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 SND1-IT1Q9HBX3 110 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 DDIT4Q9NX09 232 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 TMEM131Q92545 1883 aa1.47□□□□□ -2.17
CCDC88A-212ENST00000474059 LOXHD1Q8IVV2 1947 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 GPR179Q6PRD1 2367 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 COL5A1P20908 1838 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 BOLA2-SMG1P6H3BVE0 249 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 CLDN34H7C241 214 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 M0R1B8 84 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 PRMT5O14744 637 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 IGLV7-43P04211 117 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 OR4Q2P0C623 313 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 HLA-GP17693 338 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 ARR3P36575 388 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 NUP62P37198 522 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 TGM4P49221 684 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 IL15RAQ13261 267 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 PMVKQ15126 192 aa1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 TOMM34Q15785 309 aaPredicted RBP1.46□□□□□ -2.18
CCDC88A-212ENST00000474059 IGFBP7Q16270 282 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms