RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CLN6Q9NWW5 311 aa13.63□□□□□ -0.23
USP40-212ENST00000473191 H2AFY2Q9P0M6 372 aaPredicted RBP13.63□□□□□ -0.23
USP40-212ENST00000473191 A0A1W2PQL4 384 aaPredicted RBP13.62□□□□□ -0.23
USP40-212ENST00000473191 PQLC2LA1A4F0 135 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 MEIOCA2RUB1 952 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 CLPSL1A2RUU4 121 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 MTRF1O75570 445 aaKnown RBP13.62□□□□□ -0.23
USP40-212ENST00000473191 ATP6V1B1P15313 513 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 ZNF684Q5T5D7 378 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 Q6ZSV7 163 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 ASRGL1Q7L266 308 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 ZDHHC13Q8IUH4 622 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 CMTM4Q8IZR5 234 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 FAM185AQ8N0U4 392 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 C11orf42Q8N5U0 333 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 POC1AQ8NBT0 407 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 OR4M1Q8NGD0 313 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 ZNF671Q8TAW3 534 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 TRMT10AQ8TBZ6 339 aaKnown RBP13.62□□□□□ -0.23
USP40-212ENST00000473191 SDSLQ96GA7 329 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 OAZ3Q9UMX2 235 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 FAM96BQ9Y3D0 163 aa13.62□□□□□ -0.23
USP40-212ENST00000473191 MEX3AA1L020 520 aaKnown RBP13.61□□□□□ -0.23
USP40-212ENST00000473191 SAC3D1A6NKF1 404 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 ZNF670-ZNF695F2Z2N8 137 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 F8VVB4 439 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 F8VWA3 439 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 PGA5P0DJD9 388 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 EGR3Q06889 387 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 CLVS2Q5SYC1 327 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 ZBTB37Q5TC79 503 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 HIST2H2BDQ6DRA6 164 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 Q6ZSR3 168 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 MKXQ8IYA7 352 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 NPRL2Q8WTW4 380 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 RORBQ92753 470 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 RNF166Q96A37 237 aaPredicted RBP13.61□□□□□ -0.23
USP40-212ENST00000473191 CITED1Q99966 193 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 PRRG3Q9BZD7 231 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 RIBC2Q9H4K1 309 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 RNF114Q9Y508 228 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 SNX5Q9Y5X3 404 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 MEGF8Q7Z7M0 2845 aa13.61□□□□□ -0.23
USP40-212ENST00000473191 IGKV1-27A0A075B6S5 117 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 MEGF11A6BM72 1044 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 J3QT63 122 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 M0R1W7 72 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 INMTO95050 263 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 CCL3L1P16619 93 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 PRDX2P32119 198 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 CAPZA1P52907 286 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 PROK1P58294 105 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 GUCA2AQ02747 115 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 UBE2V2Q15819 145 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 BRICD5Q6PL45 260 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 C17orf107Q6ZR85 190 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 CATSPERDQ86XM0 798 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 RDH10Q8IZV5 341 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 PRSS35Q8N3Z0 413 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 YIPF7Q8N8F6 280 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 EME1Q96AY2 570 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 DMRTB1Q96MA1 342 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 GABARAPL3Q9BY60 117 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 METTL8Q9H825 291 aaKnown RBP13.6□□□□□ -0.23
USP40-212ENST00000473191 HES4Q9HCC6 221 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 AASSQ9UDR5 926 aa13.6□□□□□ -0.23
USP40-212ENST00000473191 DLGAP1O14490 977 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 FBP1P09467 338 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 CCL1P22362 96 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 EEF1B2P24534 225 aaKnown RBP13.59□□□□□ -0.23
USP40-212ENST00000473191 HTR1FP30939 366 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 UBE2E1P51965 193 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 ZNF85Q03923 595 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 ZNF273Q14593 569 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 TMEM200BQ69YZ2 307 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 GID4Q8IVV7 300 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 ZSCAN4Q8NAM6 433 aaPredicted RBP13.59□□□□□ -0.23
USP40-212ENST00000473191 OR10H4Q8NGA5 316 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 PYDC1Q8WXC3 89 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 MNTQ99583 582 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 NRIP2Q9BQI9 281 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 OSBPL10Q9BXB5 764 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 DPAGT1Q9H3H5 408 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 MOB1AQ9H8S9 216 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 RASL12Q9NYN1 266 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 OR14J1Q9UGF5 321 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 VPREB3Q9UKI3 123 aa13.59□□□□□ -0.23
USP40-212ENST00000473191 A0A1B0GUS0 222 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 FAM230AA0A1W2PPH8 454 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 H0YAE9 185 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 ANGPTL7O43827 346 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 NOS1APO75052 506 aaPredicted RBP13.58□□□□□ -0.24
USP40-212ENST00000473191 MPZP25189 248 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 KIR3DL2P43630 455 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 BMXP51813 675 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 ERVK11-1P61568 191 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 TP53I3Q53FA7 332 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 ASPHD2Q6ICH7 369 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 C1orf122Q6ZSJ8 110 aa13.58□□□□□ -0.24
USP40-212ENST00000473191 ZNF573Q86YE8 665 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms