RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ASRGL1Q7L266 308 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 POC1AQ8NBT0 407 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 OR10H4Q8NGA5 316 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 OR14K1Q8NGZ2 314 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 OR4F5Q8NH21 305 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 PYDC1Q8WXC3 89 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 DMRTB1Q96MA1 342 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 GABARAPL3Q9BY60 117 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 SLITRK2Q9H156 845 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 C1RLQ9NZP8 487 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 ZNF222Q9UK12 451 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 MAB21L2Q9Y586 359 aa12.9□□□□□ -0.34
CCDC88B-205ENST00000472524 A0A1W2PQL4 384 aaPredicted RBP12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 RFPL4AA6NLU0 287 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 RFPL4AL1F8VTS6 287 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 J3QT63 122 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 KNG1P01042 644 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 EEF1B2P24534 225 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 RELBQ01201 579 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 SMIM21Q3B7S5 101 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 MIDNQ504T8 468 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 TMEM42Q69YG0 159 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 METAP1DQ6UB28 335 aaPredicted RBP12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 LDLRAD3Q86YD5 345 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 ZNF573Q86YE8 665 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 FAM185AQ8N0U4 392 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 PNKDQ8N490 385 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 RBM4BQ9BQ04 359 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 BEX1Q9HBH7 125 aa12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 CAB39Q9Y376 341 aaPredicted RBP12.89□□□□□ -0.35
CCDC88B-205ENST00000472524 WNK1Q9H4A3 2382 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 PQLC2LA1A4F0 135 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 M0R1W7 72 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 DLGAP1O14490 977 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 NPFFO15130 113 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 GPR137BO60478 399 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 NXPH2O95156 264 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 FBP1P09467 338 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 OR2T7P0C7T2 308 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 PGA5P0DJD9 388 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 ATP6V1E1P36543 226 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 IER3P46695 156 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 CEBPDP49716 269 aaPredicted RBP12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 BLMHQ13867 455 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 OR8J1Q8NGP2 316 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 OR2T27Q8NH04 317 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 TRMT10AQ8TBZ6 339 aaKnown RBP12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 NPRL2Q8WTW4 380 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 DYRK2Q92630 601 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 EME1Q96AY2 570 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 SDSLQ96GA7 329 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 OSBPL10Q9BXB5 764 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 PLEKHA1Q9HB21 404 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 RASL12Q9NYN1 266 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 POLDIP2Q9Y2S7 368 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 MMP24Q9Y5R2 645 aa12.88□□□□□ -0.35
CCDC88B-205ENST00000472524 TGP01266 2768 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 TRBV23-1A0A0A0MS06 115 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 MEIOCA2RUB1 952 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 METTL15A6NJ78 407 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 H0YAE9 185 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 SYT7O43581 403 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 NDUFA7O95182 113 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 SAA4P35542 130 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 CDC42P60953 191 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 OLFML2AQ68BL7 652 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 NCR3LG1Q68D85 454 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 C17orf107Q6ZR85 190 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 CATSPERDQ86XM0 798 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 CD177Q8N6Q3 437 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 WFDC12Q8WWY7 111 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 RORBQ92753 470 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 TNFRSF14Q92956 283 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 DPAGT1Q9H3H5 408 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 METTL8Q9H825 291 aaKnown RBP12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 C19orf12Q9NSK7 152 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 IMPAD1Q9NX62 359 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 ZNRD1Q9P1U0 126 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 OR14J1Q9UGF5 321 aa12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.87□□□□□ -0.35
CCDC88B-205ENST00000472524 A0A1B0GUS0 222 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 FAM230AA0A1W2PPH8 454 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 BTBD17A6NE02 478 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 ANKRD61A6NGH8 418 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 DHRS7CA6NNS2 312 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 SLC1A7O00341 560 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 PAHP00439 452 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 CCL1P22362 96 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 PRDX2P32119 198 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 TAF9Q16594 264 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 TP53I3Q53FA7 332 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 C1orf122Q6ZSJ8 110 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 Q6ZSR3 168 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 FAM220AQ7Z4H9 259 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 ANGPTL5Q86XS5 388 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 CALHM1Q8IU99 346 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 RFKQ969G6 155 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 UBE2FQ969M7 185 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 ADI1Q9BV57 179 aa12.86□□□□□ -0.35
CCDC88B-205ENST00000472524 GNG8Q9UK08 70 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms