RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OR11L1Q8NGX0 322 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 OR10AC1Q8NH08 325 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 SMIM19Q96E16 107 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 RNF170Q96K19 258 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 DUX5Q96PT3 197 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 HIST1H2AAQ96QV6 131 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 CHST5Q9GZS9 411 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 FGF23Q9GZV9 251 aaPredicted RBP9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 UFSP2Q9NUQ7 469 aa9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 SIRT4Q9Y6E7 314 aaPredicted RBP9.94□□□□□ -0.82
SQSTM1-206ENST00000466342 PPIAL4EA0A075B759 164 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 PPIAL4CA0A0B4J2A2 164 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 ISPDA4D126 451 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 DNAJC9-AS1A6NH13 148 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 OR5B21A6NL26 309 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 LRRC30A6NM36 301 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 PPIAL4DF5H284 164 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 M0QZ24 198 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 CYB5R3P00387 301 aaPredicted RBP9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 IGHV2-70P01814 119 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 MT-ND2P03891 347 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 PPIAL4FP0DN26 164 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 IRF2P14316 349 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF20P17024 532 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 MDKP21741 143 aaPredicted RBP9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 RBMXP38159 391 aaKnown RBP9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 GABARAPL2P60520 117 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 GNG3P63215 75 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 BDH1Q02338 343 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 ACSM1Q08AH1 577 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 DOC2BQ14184 412 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 TMEM155Q4W5P6 130 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 FAM76BQ5HYJ3 339 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 DCAF12L2Q5VW00 463 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 KCTD8Q6ZWB6 473 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 LRRC28Q86X40 367 aaPredicted RBP9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 C1QL4Q86Z23 238 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 OR5A2Q8NGI9 324 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 OR13C3Q8NGS6 347 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 PP6455Q8WZ26 134 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 ADAT3Q96EY9 351 aaPredicted RBP9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 CCDC90BQ9GZT6 254 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 TLNRD1Q9H1K6 362 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 GPR173Q9NS66 373 aa9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 LSM2Q9Y333 95 aaKnown RBP9.93□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF732B4DXR9 585 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 FOXH1O75593 365 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 GATBO75879 557 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 FSTL3O95633 263 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 SERPINA3P01011 423 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 FSHBP01225 129 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 RNASE1P07998 156 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 CPT2P23786 658 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 EEF1B2P24534 225 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 GPM6AP51674 278 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 BTG1P62324 171 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 SRSF4Q08170 494 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 SPHARQ15513 63 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 DMRTC1Q5HYR2 192 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 ZNF826PQ6ZT77 177 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 C11orf53Q8IXP5 236 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 SPICQ8N5J4 248 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 ZFP41Q8N8Y5 198 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 GPR148Q8TDV2 347 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 TSEN15Q8WW01 171 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 RGP1Q92546 391 aaPredicted RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 SLC25A28Q96A46 364 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 FGGYQ96C11 551 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 PGLYRP3Q96LB9 341 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 C1orf147Q96MC9 270 aaPredicted RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 TECTBQ96PL2 329 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 OR5M11Q96RB7 305 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 YTHDF1Q9BYJ9 559 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 PATZ1Q9HBE1 687 aaKnown RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 C1orf123Q9NWV4 160 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 RNF7Q9UBF6 113 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 POLR3KQ9Y2Y1 108 aaPredicted RBP9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 MMP24Q9Y5R2 645 aa9.92□□□□□ -0.82
SQSTM1-206ENST00000466342 hCG_1807616A0A1W2PRN6 198 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 PQLC2LA1A4F0 135 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 TIMM23O14925 209 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 MRPS14O60783 128 aaKnown RBP9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 CD1AP06126 327 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 CELP19835 753 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 BAMBIQ13145 260 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 CNN3Q15417 329 aaKnown RBP9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 MED22Q15528 200 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 TBCEQ15813 527 aaPredicted RBP9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 UBE2V2Q15819 145 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 YIF1BQ5BJH7 314 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 WDR82Q6UXN9 313 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 UTS2BQ765I0 119 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 MUC20Q8N307 709 aaPredicted RBP9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 PARP16Q8N5Y8 322 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 GCSAMQ8N6F7 178 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 SCCPDHQ8NBX0 429 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 GHSRQ92847 366 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 RPL3LQ92901 407 aaKnown RBP9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 OR51I2Q9H344 312 aa9.91□□□□□ -0.82
SQSTM1-206ENST00000466342 C7orf69Q9H7B7 122 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms