RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ACOD1A6NK06 481 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 E2F6O75461 281 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 OPN1MWP04001 364 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 PGA5P0DJD9 388 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 OPN1MW2P0DN77 364 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 OPN1MW3P0DN78 364 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 ATP6V1B1P15313 513 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 CCL3L1P16619 93 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 CALB2P22676 271 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 ROM1Q03395 351 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF273Q14593 569 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 ZBTB37Q5TC79 503 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 SAMD5Q5TGI4 173 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 TMEM200BQ69YZ2 307 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 KCTD18Q6PI47 426 aaPredicted RBP13.06□□□□□ -0.32
COL7A1-204ENST00000462475 C11orf88Q6PI97 169 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 BATF2Q8N1L9 274 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 OR4M1Q8NGD0 313 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 OR2T6Q8NHC8 308 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 PIFOQ8TCI5 191 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 OR8B4Q96RC9 309 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF556Q9HAH1 456 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 RAB18Q9NP72 206 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 RASL12Q9NYN1 266 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 NUFIP1Q9UHK0 495 aaKnown RBP13.06□□□□□ -0.32
COL7A1-204ENST00000462475 ENPP5Q9UJA9 477 aa13.06□□□□□ -0.32
COL7A1-204ENST00000462475 J3QT63 122 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 SLC1A7O00341 560 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 GSC2O15499 205 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 DHRS3O75911 302 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 PRB2P02812 416 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-204ENST00000462475 VSIG10L2P0DP72 767 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 PRDX2P32119 198 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 HAAOP46952 286 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 GABPB1Q06547 395 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF829Q3KNS6 432 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF782Q6ZMW2 699 aaPredicted RBP13.05□□□□□ -0.32
COL7A1-204ENST00000462475 LHFPL4Q7Z7J7 247 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF679Q8IYX0 411 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF561Q8N587 486 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 NPFFR1Q9GZQ6 430 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 HEXA-AS1Q9H8Q6 139 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 GPR173Q9NS66 373 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 TVP23BQ9NYZ1 205 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 IKZF2Q9UKS7 526 aa13.05□□□□□ -0.32
COL7A1-204ENST00000462475 AQP12BA6NM10 295 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 NRASP01111 189 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 TTRP02766 147 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 PIPP12273 146 aaPredicted RBP13.04□□□□□ -0.32
COL7A1-204ENST00000462475 ANXA8P13928 327 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 RIDAP52758 137 aaKnown RBP13.04□□□□□ -0.32
COL7A1-204ENST00000462475 SNAPC1Q16533 368 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 PLA1AQ53H76 456 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF684Q5T5D7 378 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 KPRPQ5T749 579 aaPredicted RBP13.04□□□□□ -0.32
COL7A1-204ENST00000462475 AQP12AQ8IXF9 295 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 LYG1Q8N1E2 194 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 DYNAPQ8N1N2 210 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 ITFG2Q969R8 447 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 NKX3-1Q99801 234 aaPredicted RBP13.04□□□□□ -0.32
COL7A1-204ENST00000462475 NRIP2Q9BQI9 281 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF702PQ9H963 129 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 USE1Q9NZ43 259 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 GTF2A1LQ9UNN4 478 aa13.04□□□□□ -0.32
COL7A1-204ENST00000462475 A0A1W2PPH5 198 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 PQLC2LA1A4F0 135 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 MAGEB4O15481 346 aaPredicted RBP13.03□□□□□ -0.32
COL7A1-204ENST00000462475 NOS1APO75052 506 aaPredicted RBP13.03□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF254O75437 659 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 SRSF10O75494 262 aaKnown RBP13.03□□□□□ -0.32
COL7A1-204ENST00000462475 NXPH2O95156 264 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 LGALS4P56470 323 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 HABP2Q14520 560 aaPredicted RBP13.03□□□□□ -0.32
COL7A1-204ENST00000462475 CLVS2Q5SYC1 327 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 LCN1P1Q5VSP4 162 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 TMEM42Q69YG0 159 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 LIAT1Q6ZQX7 453 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 PLEKHG7Q6ZR37 379 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 ZNF573Q86YE8 665 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 OR2T27Q8NH04 317 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 ASB17Q8WXJ9 295 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 CNN2Q99439 309 aaKnown RBP13.03□□□□□ -0.32
COL7A1-204ENST00000462475 THTPAQ9BU02 230 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 TEX12Q9BXU0 123 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 C1orf21Q9H246 121 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 HES4Q9HCC6 221 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 OR14J1Q9UGF5 321 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 POLDIP2Q9Y2S7 368 aa13.03□□□□□ -0.32
COL7A1-204ENST00000462475 MEX3AA1L020 520 aaKnown RBP13.02□□□□□ -0.33
COL7A1-204ENST00000462475 A6NIN4 97 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 FAM90A8PA6NJQ4 464 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 LOC110117498-PIK3R3F6TDL0 507 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 M0R129 80 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 PRKYO43930 277 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 TK1P04183 234 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 DLX6P56179 175 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 BCL2L15Q5TBC7 163 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 ASRGL1Q7L266 308 aa13.02□□□□□ -0.33
COL7A1-204ENST00000462475 BCDIN3DQ7Z5W3 292 aaKnown RBP13.02□□□□□ -0.33
COL7A1-204ENST00000462475 APOL4Q9BPW4 351 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms