RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 MMP26Q9NRE1 261 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 C1orf123Q9NWV4 160 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 APOC1P02654 83 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 CYC1P08574 325 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 PATE4P0C8F1 98 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 NTF4P34130 210 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 OPRM1P35372 400 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 HGFACQ04756 655 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 SCRN3Q0VDG4 424 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 ARL6IP1Q15041 203 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 FAM27BQ5VT28 67 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 OR2A2Q6IF42 318 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 ZNF774Q6NX45 483 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 Q6ZSR3 168 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 RPS19BP1Q86WX3 136 aaKnown RBP10.3□□□□□ -0.76
CD44-209ENST00000433892 C20orf196Q8IYI0 205 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 CNTNAP3BQ96NU0 1288 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 LIME1Q9H400 295 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 CRLF2Q9HC73 371 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 HPF1Q9NWY4 346 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 DNAJB11Q9UBS4 358 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 FAM96BQ9Y3D0 163 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 IGKV1-27A0A075B6S5 117 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 SGCEO43556 437 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 LRP3O75074 770 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 CFIP05156 583 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 OR5H8P0DN80 308 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 HKR1P10072 659 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 ZNF708P17019 499 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 RAC1P63000 192 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 MRPS34P82930 218 aaKnown RBP10.29□□□□□ -0.76
CD44-209ENST00000433892 SPEM2Q0P670 501 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 RSU1Q15404 277 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 FRYQ5TBA9 3013 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 NSUN5P2Q63ZY6 315 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 H3F3CQ6NXT2 135 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 BRICD5Q6PL45 260 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 YRDCQ86U90 279 aaKnown RBP10.29□□□□□ -0.76
CD44-209ENST00000433892 CBLN2Q8IUK8 224 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 SGPP2Q8IWX5 399 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 ADAMTS17Q8TE56 1095 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 C10orf35Q96D05 121 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 REEP6Q96HR9 211 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 TAF9BQ9HBM6 251 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 ANXA10Q9UJ72 324 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 MEMO1Q9Y316 297 aa10.29□□□□□ -0.76
CD44-209ENST00000433892 CCDC187A0A096LP49 1063 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 A0A0G2JMM0 328 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 A0A1W2PPB8 328 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 A0A1W2PRS3 328 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 KIR3DP1A8MWS1 328 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 CA11O75493 328 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 CBR3O75828 277 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 LCATP04180 440 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 CRYGSP22914 178 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 PPA1Q15181 289 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 RTL6Q6ICC9 239 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 AKR7LQ8NHP1 331 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 FNDC9Q8TBE3 224 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 M1APQ8TC57 530 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 DYRK2Q92630 601 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 HLA-CQ95604 372 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 TOMM40LQ969M1 308 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 CNTNAP3Q9BZ76 1288 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 METTL9Q9H1A3 318 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 SH2D2AQ9NP31 389 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 UQCC1Q9NVA1 299 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 AK3Q9UIJ7 227 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 PILRBQ9UKJ0 227 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 PADI1Q9ULC6 663 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 NSG1A0A0A6YYJ2 146 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 ZNF850A8MQ14 1090 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 C9J4A7 227 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 RRP8O43159 456 aaKnown RBP10.28□□□□□ -0.76
CD44-209ENST00000433892 SYNGR3O43761 229 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 FBXO24O75426 580 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 B4GALT1P15291 398 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 NME2P22392 152 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 SUCLG1P53597 346 aaKnown RBP10.28□□□□□ -0.76
CD44-209ENST00000433892 PJVKQ0ZLH3 352 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 HAGHLQ6PII5 290 aaPredicted RBP10.28□□□□□ -0.76
CD44-209ENST00000433892 PLXDC2Q6UX71 529 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 AGBL5Q8NDL9 886 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 OR5T2Q8NGG2 359 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 MRPL24Q96A35 216 aaKnown RBP10.28□□□□□ -0.76
CD44-209ENST00000433892 SPSB1Q96BD6 273 aa10.28□□□□□ -0.76
CD44-209ENST00000433892 INTS12Q96CB8 462 aaKnown RBP10.28□□□□□ -0.76
CD44-209ENST00000433892 CPNE2Q96FN4 548 aaPredicted RBP10.28□□□□□ -0.76
CD44-209ENST00000433892 ALKBH3Q96Q83 286 aaPredicted RBP10.28□□□□□ -0.76
CD44-209ENST00000433892 FAM221AA4D161 298 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 CRYM-AS1A6NIL9 109 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 NUDT19A8MXV4 375 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 K7EPK0 472 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 MED6O75586 246 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 CTSDP07339 412 aaPredicted RBP10.27□□□□□ -0.76
CD44-209ENST00000433892 IL32P24001 234 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 RPL12P30050 165 aaKnown RBP10.27□□□□□ -0.76
CD44-209ENST00000433892 LPAR6P43657 344 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 RAB35Q15286 201 aa10.27□□□□□ -0.76
CD44-209ENST00000433892 SP6Q3SY56 376 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms