RNA–Protein interactions for RNA: ENST00000428064.5

LIMS1-208, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 2

Gene LIMS1, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-208ENST00000428064 DNAJC8O75937 253 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-208ENST00000428064 NRASP01111 189 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 PGA5P0DJD9 388 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 ACTR3P61158 418 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 EFNB1P98172 346 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 AANATQ16613 207 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 CLVS2Q5SYC1 327 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 NXNL2Q5VZ03 156 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 MEPCEQ7L2J0 689 aaKnown RBP17.12■□□□□ 0.33
LIMS1-208ENST00000428064 MEGF9Q9H1U4 602 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 FBLN5Q9UBX5 448 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 POLDIP2Q9Y2S7 368 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 R4GMQ9 66 aa17.12■□□□□ 0.33
LIMS1-208ENST00000428064 LOC110117498-PIK3R3F6TDL0 507 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 CXCR4P61073 352 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 EGR3Q06889 387 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 AADACL4Q5VUY2 407 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 ZNF322Q6U7Q0 402 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-208ENST00000428064 ELMOD2Q8IZ81 293 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 FAM185AQ8N0U4 392 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 FAM234AQ9H0X4 552 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 ADGRL4Q9HBW9 690 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 HES4Q9HCC6 221 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 C19orf12Q9NSK7 152 aa17.11■□□□□ 0.33
LIMS1-208ENST00000428064 PQLC2LA1A4F0 135 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 RFPL4AA6NLU0 287 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 ZAR1LA6NP61 321 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 RFPL4AL1F8VTS6 287 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 SLC1A7O00341 560 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 MPZP25189 248 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 HAAOP46952 286 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 DMRTC1Q5HYR2 192 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 BCL2L15Q5TBC7 163 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 SLX4IPQ5VYV7 408 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 SLC35F2Q8IXU6 374 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 CD177Q8N6Q3 437 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 TMEM163Q8TC26 289 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 UBE2FQ969M7 185 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 PPP1R14AQ96A00 147 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 AJUBAQ96IF1 538 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 NRIP2Q9BQI9 281 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 TTTY10Q9BZA0 68 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 CLN6Q9NWW5 311 aa17.1■□□□□ 0.33
LIMS1-208ENST00000428064 PRKDCP78527 4128 aaKnown RBP17.1■□□□□ 0.33
LIMS1-208ENST00000428064 A0A1B0GTI1 187 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 ANKRD61A6NGH8 418 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 H3BUX3 64 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 SYNGR1O43759 233 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 ANGPTL7O43827 346 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 CCL1P22362 96 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 PRDX2P32119 198 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 CAPZA1P52907 286 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 RPL31P62899 125 aaKnown RBP17.09■□□□□ 0.33
LIMS1-208ENST00000428064 C12orf73Q69YU5 71 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 SLC35E4Q6ICL7 350 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 C11orf88Q6PI97 169 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 GID4Q8IVV7 300 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 C11orf42Q8N5U0 333 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 OR51G2Q8NGK0 314 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 OR14K1Q8NGZ2 314 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 HEXA-AS1Q9H8Q6 139 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 KRT84Q9NSB2 600 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 H2AFY2Q9P0M6 372 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-208ENST00000428064 OR52A1Q9UKL2 312 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.09■□□□□ 0.33
LIMS1-208ENST00000428064 SNX5Q9Y5X3 404 aa17.09■□□□□ 0.33
LIMS1-208ENST00000428064 hCG_1809904A0A1W2PP81 198 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 A0A1W2PPE2 198 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 A0A1W2PR64 198 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 A0A1W2PRV1 198 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 ZNF670-ZNF695F2Z2N8 137 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 C2orf68Q2NKX9 166 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 LRRC75BQ2VPJ9 315 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 CRIP3Q6Q6R5 217 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 BCDIN3DQ7Z5W3 292 aaKnown RBP17.08■□□□□ 0.32
LIMS1-208ENST00000428064 CALHM1Q8IU99 346 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 MKXQ8IYA7 352 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 TCEANCQ8N8B7 351 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 ZNF488Q96MN9 340 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 SSX3Q99909 188 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 APOL4Q9BPW4 351 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 GABARAPL1Q9H0R8 117 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 PPA2Q9H2U2 334 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 RANBP3Q9H6Z4 567 aaPredicted RBP17.08■□□□□ 0.32
LIMS1-208ENST00000428064 RAB18Q9NP72 206 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 USE1Q9NZ43 259 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 ENOPH1Q9UHY7 261 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 MRM2Q9UI43 246 aaKnown RBP17.08■□□□□ 0.32
LIMS1-208ENST00000428064 WNK1Q9H4A3 2382 aa17.08■□□□□ 0.32
LIMS1-208ENST00000428064 NXPH2O95156 264 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 ERVK11-1P61568 191 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 ATP6AP1Q15904 470 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 TMEM200BQ69YZ2 307 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 KDM4DQ6B0I6 523 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 LIAT1Q6ZQX7 453 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 BCAS4Q8TDM0 211 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 C17orf50Q8WW18 174 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 PKIBQ9C010 78 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 GPR173Q9NS66 373 aa17.07■□□□□ 0.32
LIMS1-208ENST00000428064 GTF2A1LQ9UNN4 478 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms