RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 CTSLP07711 333 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 FGF4P08620 206 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 PAEPP09466 180 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 UBCP0CG48 685 aaKnown RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 RAB4AP20338 218 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 RFC3P40938 356 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 KIR3DL2P43630 455 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 TAS2R31P59538 309 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 SNAP25P60880 206 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 PSMC5P62195 406 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 RPL23P62829 140 aaKnown RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 CACNG7P62955 275 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 CRADDP78560 199 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ITGB3BPQ13352 177 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 KIR2DS1Q14954 304 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 NCF4Q15080 339 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 SHHQ15465 462 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 UAP1Q16222 522 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 LY6EQ16553 131 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 TRMT5Q32P41 509 aaKnown RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF829Q3KNS6 432 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 TTMPQ5BVD1 217 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 BEX5Q5H9J7 111 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 PPP1R2P3Q6NXS1 205 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ZFP1Q6P2D0 407 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ANGPTL8Q6UXH0 198 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 NPSR1Q6W5P4 371 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 OTUD6AQ7L8S5 288 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 NEGR1Q7Z3B1 354 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 HMGN2P46Q86SG4 172 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 HORMAD1Q86X24 394 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 KATNAL2Q8IYT4 538 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 MICU2Q8IYU8 434 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 TMEM256Q8N2U0 113 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ARRDC1Q8N5I2 433 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 COMMD1Q8N668 190 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 NPWQ8N729 165 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 TMEM161BQ8NDZ6 487 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 OR52K2Q8NGK3 314 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 OR6N1Q8NGY5 312 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 OR13G1Q8NGZ3 307 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 OR52P1PQ8NH57 321 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 OR10G6Q8NH81 332 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 LINC01560Q8TB33 94 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 TLCD1Q96CP7 247 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ATP6V1G3Q96LB4 118 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 JSRP1Q96MG2 331 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 CDX2Q99626 313 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 DOK1Q99704 481 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 RNF5Q99942 180 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 FOXC2Q99958 501 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 SULT4A1Q9BR01 284 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 LXNQ9BS40 222 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ZNF2Q9BSG1 426 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 SLIRPQ9GZT3 109 aaKnown RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 FGF23Q9GZV9 251 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 IQCGQ9H095 443 aaKnown RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 FAM107BQ9H098 131 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 C1orf198Q9H425 327 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ELOVL6Q9H5J4 265 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 LRRC19Q9H756 370 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 ZC4H2Q9NQZ6 224 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 PXMP2Q9NR77 195 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 MCUBQ9NWR8 336 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 CLN6Q9NWW5 311 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 PDP1Q9P0J1 537 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 TSSC4Q9Y5U2 329 aaPredicted RBP1.41□□□□□ -2.18
PTPRC-208ENST00000427110 DOCK4Q8N1I0 1966 aa1.41□□□□□ -2.18
PTPRC-208ENST00000427110 PATJQ8NI35 1801 aa1.4□□□□□ -2.18
PTPRC-208ENST00000427110 PTPRDP23468 1912 aa1.4□□□□□ -2.18
PTPRC-208ENST00000427110 MIA3Q5JRA6 1907 aa1.4□□□□□ -2.18
PTPRC-208ENST00000427110 NUP205Q92621 2012 aa1.4□□□□□ -2.18
PTPRC-208ENST00000427110 CHD5Q8TDI0 1954 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 NLRC5Q86WI3 1866 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 GBF1Q92538 1859 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 TRAV6A0A075B6T7 132 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 KCNE1BA0A087WTH5 132 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 TSPAN11A1L157 253 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 GMNCA6NCL1 334 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 A6NDN8 102 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 ERICH4A6NGS2 130 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 LRRIQ4A6NIV6 560 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 ZNF850A8MQ14 1090 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 PDZK1P1A8MUH7 402 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 SUPT3HB4E1H0 165 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 H0YJW9 148 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 GOLGA8TH3BQL2 631 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 NME4O00746 187 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 SLC16A4O15374 487 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 TRAPPC3O43617 180 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 CHMP2AO43633 222 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 ZNF207O43670 478 aaKnown RBP1.4□□□□□ -2.19
PTPRC-208ENST00000427110 EIF1BO60739 113 aaKnown RBP1.4□□□□□ -2.19
PTPRC-208ENST00000427110 HSBP1O75506 76 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 PROSCO94903 275 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 FAM107AO95990 144 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 GLAP06280 429 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 CTRB1P17538 263 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 IL1RNP18510 177 aa1.4□□□□□ -2.19
PTPRC-208ENST00000427110 USF1P22415 310 aaPredicted RBP1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms