RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 IFITM5A6NNB3 132 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CDIPTO14735 213 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 NCR1O76036 304 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 F12P00748 615 aaPredicted RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 CD8AP01732 235 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CSF3P09919 207 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 DAOP14920 347 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 ZNF182P17025 639 aaPredicted RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 GLRA1P23415 457 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 RPS19P39019 145 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 ATP5J2P56134 94 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 MRPS11P82912 194 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 MAB21L1Q13394 359 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 SMIM21Q3B7S5 101 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 FAM76BQ5HYJ3 339 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 DMRTC1Q5HYR2 192 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 HES5Q5TA89 166 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 PRAMEF6Q5VXH4 476 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 GLIPR1L1Q6UWM5 242 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 PXT1Q8NFP0 134 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 KCNG3Q8TAE7 436 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 RAB1CQ92928 201 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CEP19Q96LK0 163 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 URM1Q9BTM9 101 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 PPIL3Q9H2H8 161 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 RNF167Q9H6Y7 350 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CNTD2Q9H8S5 307 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 BEX4Q9NWD9 120 aaPredicted RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 ABRACLQ9P1F3 81 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 TENM4Q6N022 2769 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 IGHV3-64DA0A0J9YX35 117 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 LOC100289279A0A1B0GTE1 492 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 A0A1W2PPR1 153 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CLDN25C9JDP6 229 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CDC14BO60729 498 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CRTAPO75718 401 aaPredicted RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 SCGNO76038 276 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 HTR3BO95264 441 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CALCBP10092 127 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 GTF2F2P13984 249 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 S100A5P33763 92 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 SCAND1P57086 179 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 ZNF181Q2M3W8 571 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 SLC22A6Q4U2R8 563 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 C1orf100Q5SVJ3 147 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 ZCCHC24Q8N2G6 241 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 BOLLQ8N9W6 283 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 NDNFQ8TB73 568 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 TBC1D15Q8TC07 691 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 LRRC29Q8WV35 223 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 AQP3Q92482 292 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 GTF3AQ92664 365 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 MRPS24Q96EL2 167 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 GCM1Q9NP62 436 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 CCDC59Q9P031 241 aaKnown RBP8.56□□□□□ -1.04
CD44-207ENST00000425428 ETV7Q9Y603 341 aa8.56□□□□□ -1.04
CD44-207ENST00000425428 TRAV38-1A0A0B4J264 116 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 SMIM30A4D0T7 59 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 A6NHS1 94 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 SPRY1O43609 319 aaPredicted RBP8.55□□□□□ -1.04
CD44-207ENST00000425428 PTBP3O95758 552 aaKnown RBP8.55□□□□□ -1.04
CD44-207ENST00000425428 ACAA1P09110 424 aaPredicted RBP8.55□□□□□ -1.04
CD44-207ENST00000425428 SERPINA2P20848 420 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 MPZP25189 248 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 OR3A4PP47883 348 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 PDLIM4P50479 330 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 DSCR9P59020 149 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 DYNC1I2Q13409 638 aaKnown RBP8.55□□□□□ -1.04
CD44-207ENST00000425428 SPCS2Q15005 226 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 MICBQ29980 383 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 TMEM255AQ5JRV8 349 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 CLEC2AQ6UVW9 174 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 OR2W3Q7Z3T1 314 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 Q8TCH9 128 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 EMG1Q92979 244 aaKnown RBP8.55□□□□□ -1.04
CD44-207ENST00000425428 NINJ1Q92982 152 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 SLAMF9Q96A28 289 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 FAM3DQ96BQ1 224 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 TLNRD1Q9H1K6 362 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 PPP1R3EQ9H7J1 279 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 LIN7BQ9HAP6 207 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 TMEM106BQ9NUM4 274 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 PLEKHA6Q9Y2H5 1048 aa8.55□□□□□ -1.04
CD44-207ENST00000425428 AKAP6Q13023 2319 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 OVOL3O00110 214 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 RGS5O15539 181 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 HEXAP06865 529 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 ADRA2CP18825 462 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 TALDO1P37837 337 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 TMEM33P57088 247 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 OR10A3P58181 314 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 P2RY14Q15391 338 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 MPPED2Q15777 294 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 FAM90A1Q86YD7 464 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 CALHM1Q8IU99 346 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 FAM58AQ8N1B3 248 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 MUC20Q8N307 709 aaPredicted RBP8.54□□□□□ -1.04
CD44-207ENST00000425428 POC1AQ8NBT0 407 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 DCUN1D5Q9BTE7 237 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 TMEM59Q9BXS4 323 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms