RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FOXO1Q12778 655 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 CHAF1BQ13112 559 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 IL13RA2Q14627 380 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 TMEM187Q14656 261 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 C1QL2Q7Z5L3 287 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 ABHD12BQ7Z5M8 362 aaPredicted RBP9.39□□□□□ -0.91
USP54-204ENST00000422491 OOSP2Q86WS3 158 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 TGIF2LXQ8IUE1 241 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 METTL27Q8N6F8 245 aaPredicted RBP9.39□□□□□ -0.91
USP54-204ENST00000422491 CYB561D1Q8N8Q1 229 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 TVP23CQ96ET8 276 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 TMEM68Q96MH6 324 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 SLC25A31Q9H0C2 315 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 LIME1Q9H400 295 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 ZNF701Q9NV72 531 aaPredicted RBP9.39□□□□□ -0.91
USP54-204ENST00000422491 ZNF319Q9P2F9 582 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 PADI1Q9ULC6 663 aa9.39□□□□□ -0.91
USP54-204ENST00000422491 A0A1B0GWJ7 208 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 A0A1W2PQD3 144 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 C9J4A7 227 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 NPIPA5E9PKD4 350 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 OR5H8P0DN80 308 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 ACRP10323 421 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 RUNX3Q13761 415 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 ICAM4Q14773 271 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 SP6Q3SY56 376 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 ZNF385CQ66K41 422 aaPredicted RBP9.38□□□□□ -0.91
USP54-204ENST00000422491 LYZL2Q7Z4W2 148 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 ZNF248Q8NDW4 579 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 OR8B12Q8NGG6 310 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 OR52M1Q8NGK5 317 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 RCC1LQ96I51 464 aaKnown RBP9.38□□□□□ -0.91
USP54-204ENST00000422491 GPER1Q99527 375 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 SUCNR1Q9BXA5 334 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 C8orf33Q9H7E9 229 aaPredicted RBP9.38□□□□□ -0.91
USP54-204ENST00000422491 MOB1AQ9H8S9 216 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 GPR84Q9NQS5 396 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 MED29Q9NX70 200 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 MCTS1Q9ULC4 181 aaKnown RBP9.38□□□□□ -0.91
USP54-204ENST00000422491 HSF4Q9ULV5 492 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 NPIPA1Q9UND3 350 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 LIPGQ9Y5X9 500 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 CDC14CA4D256 554 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 CDRT15L2A8MXV6 281 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 MSTNO14793 375 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 TCAPO15273 167 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 OR5AC1P0C628 307 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 ZNF43P17038 809 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 DAP3P51398 398 aaKnown RBP9.38□□□□□ -0.91
USP54-204ENST00000422491 PIGPP57054 158 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 ZP4Q12836 540 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 GRINAQ7Z429 371 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 LRTM2Q8N967 370 aa9.38□□□□□ -0.91
USP54-204ENST00000422491 RBM14Q96PK6 669 aaKnown RBP9.38□□□□□ -0.91
USP54-204ENST00000422491 H0YIG0 161 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 TSPAN2O60636 221 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 CA11O75493 328 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 SCAF4O95104 1147 aaKnown RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 HSPB1P04792 205 aaKnown RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 CEBPGP53567 150 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 SLC22A25Q6T423 547 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 SLC35E3Q7Z769 313 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 DPPA2Q7Z7J5 298 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 COMMD2Q86X83 199 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 C12orf76Q8N812 135 aaPredicted RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 OR5D18Q8NGL1 313 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 OR14K1Q8NGZ2 314 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 SPPL3Q8TCT6 385 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 GPR119Q8TDV5 335 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 SLC37A2Q8TED4 501 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 MMABQ96EY8 250 aaPredicted RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 C18orf12Q96KH6 178 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 FAM210BQ96KR6 192 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 GAL3ST4Q96RP7 486 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 NIPSNAP3BQ9BS92 247 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 OR8D2Q9GZM6 311 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 NAA60Q9H7X0 242 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 PNO1Q9NRX1 252 aaKnown RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 FAM86C1Q9NVL1 165 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 CDH23Q9H251 3354 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 SMCO3A2RU48 225 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 NPIPB13A6NJU9 1138 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 NPIPB4C9JG80 1138 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 IGKV3-11P04433 115 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 SNRPCP09234 159 aaKnown RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 QDPRP09417 244 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 CCL1P22362 96 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 ATP6V0CP27449 155 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 IL12BP29460 328 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 ALDH3B1P43353 468 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 ASCL1P50553 236 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 EWSR1Q01844 656 aaKnown RBP eCLIP9.37□□□□□ -0.91
USP54-204ENST00000422491 POU3F1Q03052 451 aaPredicted RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 JOSD1Q15040 202 aaPredicted RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 DMRTC1Q5HYR2 192 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 ZNF506Q5JVG8 444 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 AKR1C8PQ5T2L2 129 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 C5orf24Q7Z6I8 188 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 ZFP62Q8NB50 900 aaPredicted RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 OR2G3Q8NGZ4 309 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms