RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 PPP1R14AQ96A00 147 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 ZNF799Q96GE5 643 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 MAP6Q96JE9 813 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 DMRTB1Q96MA1 342 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 CCL13Q99616 98 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 AURKAIP1Q9NWT8 199 aaPredicted RBP13.16□□□□□ -0.3
CUX2-202ENST00000397643 TPRKBQ9Y3C4 175 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 COL7A1Q02388 2944 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 DNAH9Q9NYC9 4486 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 TENM3Q9P273 2699 aa13.16□□□□□ -0.3
CUX2-202ENST00000397643 hCG_1807616A0A1W2PRN6 198 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 ANKRD61A6NGH8 418 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 XPNPEP2O43895 674 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 GRPP07492 148 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 LYNP07948 512 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 CCDC159P0C7I6 412 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 AMY2BP19961 511 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 ALOX5APP20292 161 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 OTX1P32242 354 aaPredicted RBP13.15□□□□□ -0.3
CUX2-202ENST00000397643 SLC15A1P46059 708 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 HCCSP53701 268 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 TPTEP56180 551 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 GUCA2AQ02747 115 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 TAF13Q15543 124 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 RBM48Q5RL73 367 aaKnown RBP13.15□□□□□ -0.3
CUX2-202ENST00000397643 GLYATL3Q5SZD4 288 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 ACBD7Q8N6N7 88 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 KLHDC1Q8N7A1 406 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 OR52I1Q8NGK6 324 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 C8orf46Q8TAG6 207 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 SLAMF6Q96DU3 332 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 MYCBPQ99417 103 aaPredicted RBP13.15□□□□□ -0.3
CUX2-202ENST00000397643 ABHD6Q9BV23 337 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 CENPMQ9NSP4 180 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 CNOT2Q9NZN8 540 aaKnown RBP13.15□□□□□ -0.3
CUX2-202ENST00000397643 DNAJB11Q9UBS4 358 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 PSORS1C1Q9UIG5 152 aa13.15□□□□□ -0.3
CUX2-202ENST00000397643 SLC1A7O00341 560 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 PSKH1P11801 424 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 PIPP12273 146 aaPredicted RBP13.14□□□□□ -0.31
CUX2-202ENST00000397643 EEF1B2P24534 225 aaKnown RBP13.14□□□□□ -0.31
CUX2-202ENST00000397643 KIR2DS4P43632 304 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 KCTD18Q6PI47 426 aaPredicted RBP13.14□□□□□ -0.31
CUX2-202ENST00000397643 CRIP3Q6Q6R5 217 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 SPERTQ8NA61 448 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 OR56B2PQ8NGI1 322 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 C17orf50Q8WW18 174 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 GGHQ92820 318 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 SEH1LQ96EE3 360 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 MRPL48Q96GC5 212 aaKnown RBP13.14□□□□□ -0.31
CUX2-202ENST00000397643 TBX5Q99593 518 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 DCTN5Q9BTE1 182 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 FGF20Q9NP95 211 aaPredicted RBP13.14□□□□□ -0.31
CUX2-202ENST00000397643 INPP5EQ9NRR6 644 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 NECAP2Q9NVZ3 263 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 BLOC1S6Q9UL45 172 aa13.14□□□□□ -0.31
CUX2-202ENST00000397643 DAPL1A0PJW8 107 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 MEIOCA2RUB1 952 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 GGT3PA6NGU5 568 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 ZNF878C9JN71 531 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 H3BUX3 64 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 J3QRE1 110 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 SELLP14151 372 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 MUC1P15941 1255 aaPredicted RBP13.13□□□□□ -0.31
CUX2-202ENST00000397643 DCKP27707 260 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 C11orf88Q6PI97 169 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 ZNF322Q6U7Q0 402 aaPredicted RBP13.13□□□□□ -0.31
CUX2-202ENST00000397643 KRT77Q7Z794 578 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.13□□□□□ -0.31
CUX2-202ENST00000397643 CMTM4Q8IZR5 234 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 STX19Q8N4C7 294 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 BEND2Q8NDZ0 799 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 LRRC29Q8WV35 223 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 RNF133Q8WVZ7 376 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 MYDGFQ969H8 173 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 SPTSSAQ969W0 71 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 ITPKCQ96DU7 683 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 TMEM80Q96HE8 168 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 AJUBAQ96IF1 538 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 COPS4Q9BT78 406 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 YTHDF1Q9BYJ9 559 aaKnown RBP13.13□□□□□ -0.31
CUX2-202ENST00000397643 CHCHD3Q9NX63 227 aaKnown RBP13.13□□□□□ -0.31
CUX2-202ENST00000397643 COPS3Q9UNS2 423 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 KLHDC2Q9Y2U9 406 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 PCDHGB5Q9Y5G0 923 aa13.13□□□□□ -0.31
CUX2-202ENST00000397643 A0A1W2PQL4 384 aaPredicted RBP13.12□□□□□ -0.31
CUX2-202ENST00000397643 PTGES3LE9PB15 166 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 PAHP00439 452 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 IGHA1P01876 353 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 H2BFMP0C1H6 154 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 TGM4P49221 684 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 UBE2E1P51965 193 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 GRB2P62993 217 aaKnown RBP13.12□□□□□ -0.31
CUX2-202ENST00000397643 ST3GAL4Q11206 333 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 MICBQ29980 383 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 STUMQ69YW2 141 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 HCP5Q6MZN7 132 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 DEGS2Q6QHC5 323 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 WDR82Q6UXN9 313 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 AHSA2Q719I0 299 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms