RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 GPR87Q9BY21 358 aa12.55□□□□□ -0.4
COL4A3-202ENST00000396578 HCSTQ9UBK5 93 aa12.55□□□□□ -0.4
COL4A3-202ENST00000396578 RPLP1P05386 114 aaKnown RBP12.55□□□□□ -0.4
COL4A3-202ENST00000396578 LDLRAD1Q5T700 205 aa12.55□□□□□ -0.4
COL4A3-202ENST00000396578 SCGB1D4Q6XE38 83 aa12.55□□□□□ -0.4
COL4A3-202ENST00000396578 SLC22A20A6NK97 555 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 BSGP35613 385 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 MDH2P40926 338 aaKnown RBP12.54□□□□□ -0.4
COL4A3-202ENST00000396578 LIMK1P53667 647 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 ANKRD34AQ69YU3 496 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 OR4D10Q8NGI6 311 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 OTOSQ8NHW6 89 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 SH2D2AQ9NP31 389 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 UPK1AO00322 258 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 GP1BAP07359 652 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 SLC6A1P30531 599 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 RAG2P55895 527 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 TMEM215Q68D42 235 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 MVB12AQ96EY5 273 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 ZNF426Q9BUY5 554 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 TEX101Q9BY14 249 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 TMEM9BQ9NQ34 198 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 MBNL1Q9NR56 388 aaKnown RBP12.54□□□□□ -0.4
COL4A3-202ENST00000396578 LPAR3Q9UBY5 353 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 SEC16AO15027 2179 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 IGHA1P01876 353 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 IGHA2P01877 340 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 CDAP32320 146 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 ASCL1P50553 236 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 AGERQ15109 404 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 DUSP18Q8NEJ0 188 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 A0A1W2PN81 502 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 DEDDO75618 318 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 POU2F2P09086 479 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 LILRB1Q8NHL6 650 aaPredicted RBP12.54□□□□□ -0.4
COL4A3-202ENST00000396578 KCNK15Q9H427 330 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 UFC1Q9Y3C8 167 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 OR2T8A6NH00 312 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 NPY1RP25929 384 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 FAM78BQ5VT40 261 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 OR1F12Q8NHA8 337 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 IL13RA2Q14627 380 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 SPATA46Q5T0L3 261 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 SLC35E4Q6ICL7 350 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 OR4A4PQ8NGN8 299 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 KISS1RQ969F8 398 aaPredicted RBP12.54□□□□□ -0.4
COL4A3-202ENST00000396578 ZNF385DQ9H6B1 395 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 SLC25A22Q9H936 323 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 OR3A1P47881 315 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 ERVS71-1P61550 626 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 ZDHHC16Q969W1 377 aa12.54□□□□□ -0.4
COL4A3-202ENST00000396578 SLIRPQ9GZT3 109 aaKnown RBP12.54□□□□□ -0.4
COL4A3-202ENST00000396578 C3orf85A0A1B0GTC6 90 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 FCMRO60667 390 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 CAMPP49913 170 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 OR2Z1Q8NG97 314 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 Q9N2K0 584 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 CLEC5AQ9NY25 188 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 ZNF391Q9UJN7 358 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 CHD5Q8TDI0 1954 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 HMSDA8MTL9 139 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 PRSS1P07477 247 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 MRM1Q6IN84 353 aaKnown RBP12.53□□□□□ -0.4
COL4A3-202ENST00000396578 TMEM116Q8NCL8 245 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 OR1L1Q8NH94 360 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 ARHGAP5-AS1Q96IT6 56 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 NPAS1Q99742 590 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 SOX15O60248 233 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 GNG3P63215 75 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 GSG1Q2KHT4 349 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 TRAT1Q6PIZ9 186 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 MUC20Q8N307 709 aaPredicted RBP12.53□□□□□ -0.4
COL4A3-202ENST00000396578 RSRP1Q9BUV0 290 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 GAL3ST2Q9H3Q3 398 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 NAT8Q9UHE5 227 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 RBFOX3A6NFN3 312 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 CRISP2P16562 243 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 OR1C1Q15619 314 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 IGSF11Q5DX21 431 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 OR1L3Q8NH93 324 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 RNF2Q99496 336 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 TMEM191AQ9H0A3 160 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 PPP1R1AQ13522 171 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 SLC36A1Q7Z2H8 476 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 TMPRSS13Q9BYE2 586 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 SSC5DA1L4H1 1573 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 RREB1Q92766 1687 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 MPC2O95563 127 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 DSCR4P56555 118 aaPredicted RBP12.53□□□□□ -0.4
COL4A3-202ENST00000396578 MRGPREQ86SM8 312 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 WDR31Q8NA23 367 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 OR6S1Q8NH40 331 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 ORAI1Q96D31 301 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 DOK1Q99704 481 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 MSL2Q9HCI7 577 aa12.53□□□□□ -0.4
COL4A3-202ENST00000396578 PPP1CAP62136 330 aa12.52□□□□□ -0.4
COL4A3-202ENST00000396578 FUT7Q11130 342 aa12.52□□□□□ -0.4
COL4A3-202ENST00000396578 OR10V1Q8NGI7 309 aa12.52□□□□□ -0.4
COL4A3-202ENST00000396578 OR2T10Q8NGZ9 312 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms