RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CACFD1Q9UGQ2 172 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 OR51B4Q9Y5P0 310 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 IGHV3-15A0A0B4J1V0 119 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 TNFRSF4P43489 277 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 OR2T6Q8NHC8 308 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 ELF5Q9UKW6 265 aaPredicted RBP10.62□□□□□ -0.71
SYNPO-202ENST00000394243 CCL26Q9Y258 94 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 COL2A1P02458 1487 aaPredicted RBP10.62□□□□□ -0.71
SYNPO-202ENST00000394243 PLA2G10O15496 165 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 LINC00696Q6ZRV3 163 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 YRDCQ86U90 279 aaKnown RBP10.62□□□□□ -0.71
SYNPO-202ENST00000394243 C17orf47Q8NEP4 570 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 DEFB108BQ8NET1 73 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 WFDC5Q8TCV5 224 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 MS4A3Q96HJ5 214 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 HES4Q9HCC6 221 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 FGF13Q92913 245 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 NGBQ9NPG2 151 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 BCL3P20749 454 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 FKBP2P26885 142 aaKnown RBP10.62□□□□□ -0.71
SYNPO-202ENST00000394243 GJA4P35212 333 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 GMLQ99445 158 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 IL23AQ9NPF7 189 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 AP5S1Q9NUS5 200 aa10.62□□□□□ -0.71
SYNPO-202ENST00000394243 A0A1B0GV90 55 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 ZNF749O43361 778 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 THBS4P35443 961 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 CCR2P41597 374 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 PLP1P60201 277 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 POLR2GP62487 172 aaKnown RBP eCLIP10.61□□□□□ -0.71
SYNPO-202ENST00000394243 GUCA2BQ16661 112 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 SPINK9Q5DT21 86 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 SLC35E4Q6ICL7 350 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 MANBALQ9NQG1 85 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FGF21Q9NSA1 209 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 ADAM11O75078 769 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 CRHP06850 196 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FUT6P51993 359 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 Q56UQ5 140 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FAM174AQ8TBP5 190 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 OXGR1Q96P68 337 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 OR4C12Q96R67 309 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 GDE1Q9NZC3 331 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 SLC45A2Q9UMX9 530 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 TIAM2Q8IVF5 1701 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 PMS2P1A4D2B8 440 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FUT3P21217 361 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 HLA-BQ31612 363 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FDX2Q6P4F2 183 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 SCGB1D4Q6XE38 83 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FBXL14Q8N1E6 418 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 UBALD1Q8TB05 177 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 C11orf40Q8WZ69 217 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 BADQ92934 168 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 MS4A4AQ96JQ5 239 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 CACNG5Q9UF02 275 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 EVPLQ92817 2033 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 HYAL3O43820 417 aaPredicted RBP10.61□□□□□ -0.71
SYNPO-202ENST00000394243 TIMP1P01033 207 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 DDTP30046 118 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 LPAL2Q16609 132 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 C16orf52Q8NHV5 167 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 EDARADDQ8WWZ3 215 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 AAMDCQ9H7C9 122 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 ZFC3H1O60293 1989 aaKnown RBP10.61□□□□□ -0.71
SYNPO-202ENST00000394243 DNAJC25-GNG10A0A024R161 153 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 GSTZ1O43708 216 aaPredicted RBP10.61□□□□□ -0.71
SYNPO-202ENST00000394243 ALOX12BO75342 701 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 VAMP5O95183 116 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 MDKP21741 143 aaPredicted RBP10.61□□□□□ -0.71
SYNPO-202ENST00000394243 HINT1P49773 126 aaPredicted RBP10.61□□□□□ -0.71
SYNPO-202ENST00000394243 ANGPTL4Q9BY76 406 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 KCNK15Q9H427 330 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 A0A1B0GTH9 108 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 LINC01553A4QN01 128 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 GAGE10A6NGK3 116 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FAM74A7A6NL05 159 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 OR5B21A6NL26 309 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 IFITM10A6NMD0 228 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 CYC1P08574 325 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 SKP2Q13309 424 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 IL10RAQ13651 578 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 FAM74A3Q4VXF1 159 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 VAX2Q9UIW0 290 aa10.61□□□□□ -0.71
SYNPO-202ENST00000394243 CXorf65A6NEN9 183 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 C11orf94C9JXX5 98 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 CTDSPLO15194 276 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 FAM157BP0CG42 384 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 COMPP49747 757 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-202ENST00000394243 OVCH2Q7RTZ1 564 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.6□□□□□ -0.71
SYNPO-202ENST00000394243 TLCD2A6NGC4 264 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 PRR35P0CG20 571 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 G6PCP35575 357 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 RHOBP62745 196 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 ZNF600Q6ZNG1 722 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 C6orf201Q7Z4U5 140 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 RNF2Q99496 336 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 GPR61Q9BZJ8 451 aa10.6□□□□□ -0.71
SYNPO-202ENST00000394243 NAGKQ9UJ70 344 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms