RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TMEM88Q6PEY1 159 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 TOMM20LQ6UXN7 152 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 OR52L2PQ8NGH6 319 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 TM4SF19Q96DZ7 209 aa11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 KTI12Q96EK9 354 aaPredicted RBP11.45□□□□□ -0.58
CCDC88C-204ENST00000389857 CXorf51AA0A1B0GTR3 108 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 ZP3P21754 424 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 HERVK_113P61574 105 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 ATP6V1FQ16864 119 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 LINC00303Q3SY05 128 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM215Q68D42 235 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 Q6ZNB5 142 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 CLRN3Q8NCR9 226 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 NPAS1Q99742 590 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 CXXC4Q9H2H0 198 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 KLK11Q9UBX7 282 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 TRBV5-4A0A0C4DH59 114 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 TMEM272A0A1B0GTI8 110 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 PYCARD-AS1I3L0S3 204 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 CRXO43186 299 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 ZNF737O75373 536 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 PSMB2P49721 201 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 SSPNQ14714 243 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 PRSS36Q5K4E3 855 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 ZNF66Q6ZN08 573 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 MRGPREQ86SM8 312 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 DERL3Q96Q80 235 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 HSD17B10Q99714 261 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 OR1A1Q9P1Q5 309 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 METTL12A8MUP2 240 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 CA6P23280 308 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 GUCA2AQ02747 115 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 KISS1Q15726 138 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 WIPI1Q5MNZ9 446 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 DGAT2L7PQ6IED9 249 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 RBPMS2Q6ZRY4 209 aaKnown RBP11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 PRRX2Q99811 253 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 FZR1Q9UM11 496 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 PSG11Q9UQ72 335 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 DOCK2Q92608 1830 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 ACP1P24666 158 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 LSM11P83369 360 aaKnown RBP eCLIP11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 GLCCI1Q86VQ1 547 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 FAM90A27PA6NNH2 459 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 LANCL1O43813 399 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 CADM4Q8NFZ8 388 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 SLC26A10Q8NG04 563 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 OR6C3Q9NZP0 311 aa11.44□□□□□ -0.58
CCDC88C-204ENST00000389857 RPL30P62888 115 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 TEX261Q6UWH6 196 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 TGIF2LXQ8IUE1 241 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 U3KQ87 197 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 GP1BAP07359 652 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 HOXA4Q00056 320 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 FBXL6Q8N531 539 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 ANKRD53Q8N9V6 530 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 OR2D2Q9H210 308 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 PLEKHB1Q9UF11 243 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 PDE4DIPQ5VU43 2346 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 LTB4R2Q9NPC1 389 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 RASL12Q9NYN1 266 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 ITGB4P16144 1822 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 SERTM1A2A2V5 107 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 DEFB108AA8MXU0 73 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 PHOX2AO14813 284 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 PRKNO60260 465 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 STAG3L2P0CL84 134 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 RD3LP0DJH9 198 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 FABP4P15090 132 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 HIST1H1DP16402 221 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 BCL3P20749 454 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 PTGFRP43088 359 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 Q3ZCU0 254 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 SEC11CQ9BY50 192 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 ERRFI1Q9UJM3 462 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 SPTY2D1-AS1A0A0U1RR47 76 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 MBTPS2O43462 519 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 IGHA1P01876 353 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 IGHA2P01877 340 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 PTOV1Q86YD1 416 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 OR1B1Q8NGR6 318 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 ADTRPQ96IZ2 230 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 MANBALQ9NQG1 85 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 KIAA1324LA8MWY0 1029 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 IGLV3-25P01717 112 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 OR3A4PP47883 348 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 RPL34P49207 117 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 MRPL58Q14197 206 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 CCL17Q92583 94 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 CYB5R1Q9UHQ9 305 aa11.43□□□□□ -0.58
CCDC88C-204ENST00000389857 ETHE1O95571 254 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 GALP22466 123 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 MNX1P50219 401 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 PDPNQ86YL7 162 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 OR4A4PQ8NGN8 299 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 PLSCR3Q9NRY6 295 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 CYSLTR2Q9NS75 346 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 AMDHD2Q9Y303 409 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 KIF13AQ9H1H9 1805 aa11.42□□□□□ -0.58
CCDC88C-204ENST00000389857 PLCH1Q4KWH8 1693 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms