RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF275Q9NSD4 429 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 OBP2AQ9NY56 170 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 ELOA3CA0A087WX78 387 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 OR5AC1P0C628 307 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 TMEM267Q0VDI3 215 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 C21orf62-AS1Q17RA5 79 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 NAT8BQ9UHF3 227 aa17.45■□□□□ 0.38
CCDC88B-202ENST00000356786 MCM3APO60318 1980 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 CXCL13O43927 109 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 CXCL2P19875 107 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 RPS16P62249 146 aaKnown RBP17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 IL13RA2Q14627 380 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 SPSB1Q96BD6 273 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 MEGF10Q96KG7 1140 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 NMES1Q9C002 83 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 OPN1MWP04001 364 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 OPN1MW2P0DN77 364 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 OPN1MW3P0DN78 364 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 S100A7P31151 101 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 FUT6P51993 359 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 EXT1Q16394 746 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNF383Q8NA42 475 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 NAA60Q9H7X0 242 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 CCR2P41597 374 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 SUB1P53999 127 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 ZDHHC23Q8IYP9 409 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 TSPAN32Q96QS1 320 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 GPR87Q9BY21 358 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 PTPRZ1P23471 2315 aaPredicted RBP17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 CDK2AP1O14519 115 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 RER1O15258 196 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 CER1O95813 267 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 MVB12AQ96EY5 273 aa17.44■□□□□ 0.38
CCDC88B-202ENST00000356786 SOX15O60248 233 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 ADPRHL1Q8NDY3 354 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 H1FXQ92522 213 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 IGHEP01854 428 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 CTLA4P16410 223 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 GFERP55789 205 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNF816Q0VGE8 651 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 MOGAT1Q96PD6 335 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 TBX21Q9UL17 535 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 H3BMH7 237 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 SPINK4O60575 86 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 PTTG1IPP53801 180 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 MRGPREQ86SM8 312 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 CISD2Q8N5K1 135 aaKnown RBP17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 NOXO1Q8NFA2 376 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 ROBO4Q8WZ75 1007 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 GPA33Q99795 319 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 FRRS1LQ9P0K9 344 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 CFDP00746 253 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 HOXB3P14651 431 aaPredicted RBP17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 CAPZBP47756 277 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 DCAF12Q5T6F0 453 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 PARM1Q6UWI2 310 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 RAB40CQ96S21 281 aa17.43■□□□□ 0.38
CCDC88B-202ENST00000356786 CDRT15L2A8MXV6 281 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 DEFA4P12838 97 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 HOXC8P31273 242 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 ERVS71-1P61550 626 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 SHHQ15465 462 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 OVCH2Q7RTZ1 564 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 HDGFL3Q9Y3E1 203 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 POLR2AP24928 1970 aaKnown RBP17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 LOC102723971A0A1B0GUV8 181 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 KIAA1324LA8MWY0 1029 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 SIGLEC5O15389 551 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 CTSVO60911 334 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 ZBTB25P24278 435 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 OR3A4PP47883 348 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 SIGLEC14Q08ET2 396 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 SCN1AP35498 2009 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 CXCL10P02778 98 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 POLR2GP62487 172 aaKnown RBP eCLIP17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNF117Q03924 483 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 PNRC1Q12796 327 aaPredicted RBP17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 GUCA2BQ16661 112 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 PRSS41Q7RTY9 318 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 UBALD1Q8TB05 177 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 ALG14Q96F25 216 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 FAM74A7A6NL05 159 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 DBX1A6NMT0 343 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 FAM166BA8MTA8 275 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 CD27P26842 260 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 FAM74A3Q4VXF1 159 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 SLC25A42Q86VD7 318 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 FBXO17Q96EF6 278 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 GINS3Q9BRX5 216 aa17.42■□□□□ 0.38
CCDC88B-202ENST00000356786 CDC14BO60729 498 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNF737O75373 536 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 C1QCP02747 245 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 USF1P22415 310 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 FGF8P55075 233 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 INSM1Q01101 510 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 JMJD6Q6NYC1 403 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 TCTEX1D1Q8N7M0 179 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 SLC26A10Q8NG04 563 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 MSL2Q9HCI7 577 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 QSER1Q2KHR3 1735 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms