RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ZNF488Q96MN9 340 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 WDR13Q9H1Z4 485 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 CKLFQ9UBR5 152 aa18.6■□□□□ 0.57
SHMT1-203ENST00000354098 PPIAL4EA0A075B759 164 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 ISPDA4D126 451 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 PPIAL4DF5H284 164 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.59■□□□□ 0.57
SHMT1-203ENST00000354098 H7C1Q1 480 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 UCHL1P09936 223 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 PPIAL4FP0DN26 164 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 MPZP25189 248 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 KISS1Q15726 138 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 DEFB108BQ8NET1 73 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 OR5D18Q8NGL1 313 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 THRSPQ92748 146 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 TMEM165Q9HC07 324 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 VCX3AQ9NNX9 186 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 TMEM138Q9NPI0 162 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 FOXJ3Q9UPW0 622 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 PPIAL4AQ9Y536 164 aa18.59■□□□□ 0.57
SHMT1-203ENST00000354098 CELSR1Q9NYQ6 3014 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 SRRM5B3KS81 715 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 MAS1P04201 325 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 JUNBP17275 347 aaPredicted RBP18.58■□□□□ 0.57
SHMT1-203ENST00000354098 BDKRB2P30411 391 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 POU3F4P49335 361 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 CD200R1LQ6Q8B3 271 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 SLC25A26Q70HW3 274 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 SATL1Q86VE3 508 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 LRRC28Q86X40 367 aaPredicted RBP18.58■□□□□ 0.57
SHMT1-203ENST00000354098 OR10Z1Q8NGY1 313 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 ZNF671Q8TAW3 534 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 PKIBQ9C010 78 aa18.58■□□□□ 0.57
SHMT1-203ENST00000354098 IGHV3OR15-7A0A075B7D8 119 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 MAGEB3O15480 346 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 SPRY1O43609 319 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-203ENST00000354098 USF1P22415 310 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-203ENST00000354098 IL24Q13007 206 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 HSD17B12Q53GQ0 312 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 NEK6Q9HC98 313 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 MTCH1Q9NZJ7 389 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 SMAD7O15105 426 aaKnown RBP18.57■□□□□ 0.56
SHMT1-203ENST00000354098 ALDOBP05062 364 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 SRMP19623 302 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 IL2RGP31785 369 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 PDZK1IP1Q13113 114 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 DDI2Q5TDH0 399 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 CLDND2Q8NHS1 167 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 SLAMF9Q96A28 289 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 POLDIP2Q9Y2S7 368 aa18.57■□□□□ 0.56
SHMT1-203ENST00000354098 TRDV1A0A1B0GX56 115 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 F8VVB4 439 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 F8VWA3 439 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 ANGPTL7O43827 346 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 PGA5P0DJD9 388 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 CD36P16671 472 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 ADRA2CP18825 462 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 MDH2P40926 338 aaKnown RBP18.56■□□□□ 0.56
SHMT1-203ENST00000354098 POC1AQ8NBT0 407 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 TMEM246Q9BRR3 403 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 OR51E2Q9H255 320 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 TCF7L1Q9HCS4 588 aa18.56■□□□□ 0.56
SHMT1-203ENST00000354098 OOEPA6NGQ2 149 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 LGALS8O00214 317 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 GLRA1P23415 457 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 ZP1P60852 638 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 LOXL1Q08397 574 aaPredicted RBP18.55■□□□□ 0.56
SHMT1-203ENST00000354098 ZNF404Q494X3 552 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 LRRTM1Q86UE6 522 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 FAM90A1Q86YD7 464 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 GPER1Q99527 375 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 GAL3ST1Q99999 423 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 MRPS26Q9BYN8 205 aaKnown RBP18.55■□□□□ 0.56
SHMT1-203ENST00000354098 SNTG1Q9NSN8 517 aa18.55■□□□□ 0.56
SHMT1-203ENST00000354098 FLNAP21333 2647 aaKnown RBP18.55■□□□□ 0.56
SHMT1-203ENST00000354098 IGKV1-12A0A0C4DH73 117 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 IGKV1D-12P01611 117 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 GADD45AP24522 165 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 CALRP27797 417 aaKnown RBP18.54■□□□□ 0.56
SHMT1-203ENST00000354098 ZNF93P35789 620 aaPredicted RBP18.54■□□□□ 0.56
SHMT1-203ENST00000354098 NPBWR2P48146 333 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 TEX36Q5VZQ5 186 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 C1QL2Q7Z5L3 287 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 OR5T2Q8NGG2 359 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 OR51F2Q8NH61 342 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 PHYHIPQ92561 330 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 NRIP2Q9BQI9 281 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 STUB1Q9UNE7 303 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 NOS1APO75052 506 aaPredicted RBP18.54■□□□□ 0.56
SHMT1-203ENST00000354098 ARL6IP5O75915 188 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 FSTL3O95633 263 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 OR3A4PP47883 348 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 ERVK11-1P61568 191 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 LMO4P61968 165 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 TMEM155Q4W5P6 130 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 C22orf42Q6IC83 251 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 TMIGD2Q96BF3 282 aa18.54■□□□□ 0.56
SHMT1-203ENST00000354098 EXOSC4Q9NPD3 245 aaKnown RBP18.54■□□□□ 0.56
SHMT1-203ENST00000354098 GYPAP02724 150 aa18.53■□□□□ 0.56
SHMT1-203ENST00000354098 TFF1P04155 84 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms