RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 SNRPGP15A8MWD9 76 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 CDC14BO60729 498 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 RAD51DO75771 328 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 IGHEP01854 428 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 PSG4Q00888 419 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 PABPC1L2AQ5JQF8 200 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 TMEM251Q8N6I4 163 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 NABP1Q96AH0 204 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 TTTY12Q9BZ98 90 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 LPAR5Q9H1C0 372 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 ACKR4Q9NPB9 350 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 EMC3Q9P0I2 261 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 LIPGQ9Y5X9 500 aa12.14□□□□□ -0.47
TRIM4-201ENST00000349062 ZNF292O60281 2723 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 C5orf49A4QMS7 147 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 LINC01387J3KSC0 135 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 SYNGR4O95473 234 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 FSTP19883 344 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 KCNJ3P48549 501 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 RSU1Q15404 277 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 CSRP2Q16527 193 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 OR14K1Q8NGZ2 314 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 FOXRED1Q96CU9 486 aaPredicted RBP12.13□□□□□ -0.47
TRIM4-201ENST00000349062 PLEKHJ1Q9NW61 149 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 B4GALT7Q9UBV7 327 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 ETV2O00321 342 aaPredicted RBP12.13□□□□□ -0.47
TRIM4-201ENST00000349062 NR2C1P13056 603 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 CNR1P21554 472 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 CD34P28906 385 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 PTGFRP43088 359 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 MEOX1P50221 254 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 IL13RA1P78552 427 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 SWI5Q1ZZU3 235 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 ATPAF1Q5TC12 328 aaPredicted RBP12.13□□□□□ -0.47
TRIM4-201ENST00000349062 CST11Q9H112 138 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 SCPEP1Q9HB40 452 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 PCDHB10Q9UN67 800 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 ANKRD11Q6UB99 2663 aaPredicted RBP12.13□□□□□ -0.47
TRIM4-201ENST00000349062 ESPL1Q14674 2120 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 WISP2O76076 250 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 SERPINA5P05154 406 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 RBMXP38159 391 aaKnown RBP12.13□□□□□ -0.47
TRIM4-201ENST00000349062 CAPZA1P52907 286 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 FLI1Q01543 452 aaPredicted RBP12.13□□□□□ -0.47
TRIM4-201ENST00000349062 TSC22D1Q15714 1073 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 ZNF260Q3ZCT1 412 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 C1orf100Q5SVJ3 147 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 PLCXD3Q63HM9 321 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 SEMA6DQ8NFY4 1073 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 OR1F12Q8NHA8 337 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 TOMM40LQ969M1 308 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 PAPOLGQ9BWT3 736 aaKnown RBP12.13□□□□□ -0.47
TRIM4-201ENST00000349062 VSIG4Q9Y279 399 aa12.13□□□□□ -0.47
TRIM4-201ENST00000349062 AKR1C3P42330 323 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 FXYD4P59646 89 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 PPP1R1AQ13522 171 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 OR2W3Q7Z3T1 314 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 C5orf24Q7Z6I8 188 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 KCNG3Q8TAE7 436 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 FAAP24Q9BTP7 215 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 TMEM38BQ9NVV0 291 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 EHFQ9NZC4 300 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 GSKIPQ9P0R6 139 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 ATMQ13315 3056 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 NPIPB13A6NJU9 1138 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 HMSDA8MTL9 139 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 NPIPB4C9JG80 1138 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 DHRS3O75911 302 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 IL5P05113 134 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 TMEM50BP56557 158 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 FOXO1Q12778 655 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 DHRS2Q13268 280 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 ZNF239Q16600 458 aaKnown RBP12.12□□□□□ -0.47
TRIM4-201ENST00000349062 PUSL1Q8N0Z8 303 aaKnown RBP12.12□□□□□ -0.47
TRIM4-201ENST00000349062 NEK7Q8TDX7 302 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 BORCS8Q96FH0 119 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 URM1Q9BTM9 101 aaKnown RBP12.12□□□□□ -0.47
TRIM4-201ENST00000349062 BPNT1O95861 308 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 EDN3P14138 238 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 ZNF92Q03936 586 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 FGL1Q08830 312 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 RBM39Q14498 530 aaKnown RBP12.12□□□□□ -0.47
TRIM4-201ENST00000349062 IGSF11Q5DX21 431 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 FAM173AQ9BQD7 235 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 GPR35Q9HC97 309 aa12.12□□□□□ -0.47
TRIM4-201ENST00000349062 ZNF716A6NP11 495 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 ATP1B3P54709 279 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 HIST3H3Q16695 136 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 MICBQ29980 383 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 PIGYQ3MUY2 71 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 PGAP1Q75T13 922 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 SPAG16Q8N0X2 631 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 INO80EQ8NBZ0 244 aaPredicted RBP12.11□□□□□ -0.47
TRIM4-201ENST00000349062 OR13C8Q8NGS7 320 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 NANPQ8TBE9 248 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 PPP1R1CQ8WVI7 109 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 TMEM54Q969K7 222 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 SH2D2AQ9NP31 389 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 PKDREJQ9NTG1 2253 aa12.11□□□□□ -0.47
TRIM4-201ENST00000349062 A0A0B4J2A0 478 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms