RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 IL2RAP01589 272 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 S100A8P05109 93 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 TPT1P13693 172 aaKnown RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 B4GALT1P15291 398 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 OTX1P32242 354 aaPredicted RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 EIF5AP63241 154 aaKnown RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 FAM189A2Q15884 450 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 PNLIPRP3Q17RR3 467 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 ATPAF1Q5TC12 328 aaPredicted RBP11.19□□□□□ -0.62
CLK3-201ENST00000345005 ZNF813Q6ZN06 617 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 C17orf107Q6ZR85 190 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 ZNF627Q7L945 461 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 SLC16A14Q7RTX9 510 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 OR2W3Q7Z3T1 314 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 OR5D14Q8NGL3 314 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 MITD1Q8WV92 249 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 SLC25A28Q96A46 364 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 APH1AQ96BI3 265 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 FGGYQ96C11 551 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 PGAM5Q96HS1 289 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 CHST6Q9GZX3 395 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 SLC7A10Q9NS82 523 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 TAS2R4Q9NYW5 299 aa11.19□□□□□ -0.62
CLK3-201ENST00000345005 F5H5K5 113 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 AQP7O14520 342 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 FGF16O43320 207 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 PLATP00750 562 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 SLC2A1P11166 492 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 CCL1P22362 96 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 SLC6A9P48067 706 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 LUMP51884 338 aaPredicted RBP11.18□□□□□ -0.62
CLK3-201ENST00000345005 EFNB2P52799 333 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 GUCA2AQ02747 115 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 RNASE10Q5GAN6 216 aaKnown RBP11.18□□□□□ -0.62
CLK3-201ENST00000345005 C1orf100Q5SVJ3 147 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 AWAT2Q6E213 333 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 ASPHD2Q6ICH7 369 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 PLXDC2Q6UX71 529 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 DOK3Q7L591 496 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.18□□□□□ -0.62
CLK3-201ENST00000345005 TMED4Q7Z7H5 227 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 COMMD2Q86X83 199 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 ZNF100Q8IYN0 542 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 OR1F12Q8NHA8 337 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 RNF141Q8WVD5 230 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 ARL11Q969Q4 196 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 NARS2Q96I59 477 aaKnown RBP11.18□□□□□ -0.62
CLK3-201ENST00000345005 SCGB3A2Q96PL1 93 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 PRDM14Q9GZV8 571 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 GTF3C1Q12789 2109 aa11.18□□□□□ -0.62
CLK3-201ENST00000345005 A0A0U1RQV5 110 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 OR2AT4A6NND4 320 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 F5H0A9 414 aaPredicted RBP11.17□□□□□ -0.62
CLK3-201ENST00000345005 M0R135 149 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 SYNGR3O43761 229 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 IGHV3-9P01782 118 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 HLA-AP01891 365 aaKnown RBP11.17□□□□□ -0.62
CLK3-201ENST00000345005 ZNF735P0CB33 412 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 SMIM6P0DI80 62 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 ZNF20P17024 532 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 ZNF32P17041 273 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 ZBTB25P24278 435 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 GNALP38405 381 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 PMPCAQ10713 525 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 RSPO1Q2MKA7 263 aaPredicted RBP11.17□□□□□ -0.62
CLK3-201ENST00000345005 IGSF11Q5DX21 431 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 NKAPLQ5M9Q1 402 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 C10orf91Q5T1B1 145 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 HAGHLQ6PII5 290 aaPredicted RBP11.17□□□□□ -0.62
CLK3-201ENST00000345005 DRAM2Q6UX65 266 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 IL34Q6ZMJ4 242 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 ABHD12BQ7Z5M8 362 aaPredicted RBP11.17□□□□□ -0.62
CLK3-201ENST00000345005 SKA3Q8IX90 412 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 RELL2Q8NC24 303 aaPredicted RBP11.17□□□□□ -0.62
CLK3-201ENST00000345005 CCDC54Q8NEL0 328 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 OR1J2Q8NGS2 313 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 ZNF799Q96GE5 643 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 DMRTA2Q96SC8 542 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 SCNM1Q9BWG6 230 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 GPR84Q9NQS5 396 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 GLRX2Q9NS18 164 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 CARHSP1Q9Y2V2 147 aaKnown RBP11.17□□□□□ -0.62
CLK3-201ENST00000345005 FRYQ5TBA9 3013 aa11.17□□□□□ -0.62
CLK3-201ENST00000345005 LOC390937A0A1W2PQ73 354 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 F8VVB4 439 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 F8VWA3 439 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 LDLRAD4O15165 306 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 NUPL2O15504 423 aaKnown RBP11.16□□□□□ -0.62
CLK3-201ENST00000345005 LMX1BO60663 402 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 CRYGSP22914 178 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 ARF1P84077 181 aaKnown RBP11.16□□□□□ -0.62
CLK3-201ENST00000345005 DHRS7BQ6IAN0 325 aaPredicted RBP11.16□□□□□ -0.62
CLK3-201ENST00000345005 EIF5AL1Q6IS14 154 aaKnown RBP11.16□□□□□ -0.62
CLK3-201ENST00000345005 ZNF774Q6NX45 483 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 P4HA3Q7Z4N8 544 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 PLPP7Q8NBV4 271 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 PPP1R1CQ8WVI7 109 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 DVL3Q92997 716 aaPredicted RBP11.16□□□□□ -0.62
CLK3-201ENST00000345005 SARAFQ96BY9 339 aa11.16□□□□□ -0.62
CLK3-201ENST00000345005 ADAT3Q96EY9 351 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms