RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF2Q9BSG1 426 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 C1orf123Q9NWV4 160 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 SRPK3Q9UPE1 567 aa11.84□□□□□ -0.51
CCDC88C-201ENST00000331194 ZNF724A8MTY0 619 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 HSD17B6O14756 317 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 PPA1Q15181 289 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 C5orf24Q7Z6I8 188 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF440Q8IYI8 595 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 PBDC1Q9BVG4 233 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 OPN3Q9H1Y3 402 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 FAM206AQ9NX38 181 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF319Q9P2F9 582 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 THAP10Q9P2Z0 257 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 C14orf166Q9Y224 244 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 TP53TG5Q9Y2B4 290 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 TRAV36DV7A0A075B6V5 113 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 DHRS7CA6NNS2 312 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 GEMIN2O14893 280 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 CLPSP04118 112 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 C5AR1P21730 350 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 OMGP23515 440 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 OR5AS1Q8N127 324 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 OR51T1Q8NGJ9 327 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 TOMM40LQ969M1 308 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 GINS3Q9BRX5 216 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 WNT5BQ9H1J7 359 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 ARV1Q9H2C2 271 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 LIME1Q9H400 295 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 PNO1Q9NRX1 252 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 MMACHCQ9Y4U1 282 aa11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 MUC22E2RYF6 1773 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-201ENST00000331194 C2orf72A6NCS6 295 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 RBFOX3A6NFN3 312 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 FIGNL2A6NMB9 653 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 DLX2Q07687 328 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 TMEM176BQ3YBM2 270 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CHRFAM7AQ494W8 412 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 TANGO2Q6ICL3 276 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF429Q86V71 674 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 PRSS58Q8IYP2 241 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 HIST1H2BLQ99880 126 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 OR8D2Q9GZM6 311 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 PRODH2Q9UF12 536 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CCDC85CA6NKD9 419 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 MARCH11A6NNE9 402 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 EREGO14944 169 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CHRM2P08172 466 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 GSTP1P09211 210 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF25P17030 456 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 LMO1P25800 156 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 P2RY1P47900 373 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 SGCBQ16585 318 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 AKR1C8PQ5T2L2 129 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CPEB2Q7Z5Q1 589 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF664Q8N3J9 261 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 COMMD1Q8N668 190 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 OR10S1Q8NGN2 331 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 EMG1Q92979 244 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF700Q9H0M5 742 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 SIRT7Q9NRC8 400 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 BORCS7-ASMTA0A0B4J1R7 106 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CCDC163A0A0D9SF12 145 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 FAM221BA6H8Z2 402 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 C5orf63A6NC05 138 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CYTIPO60759 359 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF20P17024 532 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 BLVRBP30043 206 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 AFF3P51826 1226 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 HSD11B2P80365 405 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 TFF2Q03403 129 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 NKAIN1Q4KMZ8 207 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 ABHD12BQ7Z5M8 362 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 SULF2Q8IWU5 870 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 SLAMF6Q96DU3 332 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 THOC3Q96J01 351 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 NUDT22Q9BRQ3 303 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 METTL9Q9H1A3 318 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 CUTCQ9NTM9 273 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 TUBD1Q9UJT1 453 aa11.82□□□□□ -0.52
CCDC88C-201ENST00000331194 LTBP2Q14767 1821 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 C17orf105B2RV13 164 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 PLPP3O14495 311 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 IFNA21P01568 189 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 HPNP05981 417 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 OR5H8P0DN80 308 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 RABIFP47224 123 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 RRADP55042 308 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 TNFRSF9Q07011 255 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 SGPP2Q8IWX5 399 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 RSC1A1Q92681 617 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 SCGB3A2Q96PL1 93 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 VN1R1Q9GZP7 353 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 ZNF581Q9P0T4 197 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 ANAPC10Q9UM13 185 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 B3GALT1Q9Y5Z6 326 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 A0A087WZY1 265 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 RPL36A-HNRNPH2H7BZ11 118 aa11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 CELA2BP08218 269 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-201ENST00000331194 FUT7Q11130 342 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms