RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 B9D1Q9UPM9 204 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 LRP12Q9Y561 859 aa12.46□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF195O14628 629 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 PLPP2O43688 288 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 DEFB108BQ8NET1 73 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 IP6K3Q96PC2 410 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 WSB2Q9NYS7 404 aaPredicted RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 NRG2O14511 850 aaPredicted RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF253O75346 499 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 SLC6A12P48065 614 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 CSNK1EP49674 416 aaKnown RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 A4GNTQ9UNA3 340 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 TCF21O43680 179 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 TMPRSS11DO60235 418 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 HLA-GP17693 338 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 OR10G8Q8NGN5 311 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 LILRB1Q8NHL6 650 aaPredicted RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 UBALD1Q8TB05 177 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 C1QTNF6Q9BXI9 259 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 A0A1W2PNR3 127 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 SRD5A3Q9H8P0 318 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 C20orf141Q9NUB4 165 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 IL17BQ9UHF5 180 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 HMX2A2RU54 273 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 RHBDL1O75783 438 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 CEACAM6P40199 344 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 ASCL1P50553 236 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 FAHD2BQ6P2I3 314 aaPredicted RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF547Q8IVP9 402 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 FAHD2AQ96GK7 314 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 ATP5SQ99766 215 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 RGPD5Q99666 1765 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 HIST1H1DP16402 221 aaKnown RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 LIMK1P53667 647 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 HTRA3P83110 453 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 DPPA3Q6W0C5 159 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF296Q8WUU4 475 aaPredicted RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 MRPL37Q9BZE1 423 aaKnown RBP12.45□□□□□ -0.42
CSPG4-201ENST00000308508 UFC1Q9Y3C8 167 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 OR51B4Q9Y5P0 310 aa12.45□□□□□ -0.42
CSPG4-201ENST00000308508 IGHV3-64DA0A0J9YX35 117 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 FAM74A7A6NL05 159 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 CORTO00230 105 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 MFNGO00587 321 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 G6PCP35575 357 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 RAB32Q13637 225 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 SPNS3Q6ZMD2 512 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 MOB3BQ86TA1 216 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 LILRA3Q8N6C8 439 aaPredicted RBP12.44□□□□□ -0.42
CSPG4-201ENST00000308508 OR52L2PQ8NGH6 319 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PHOSPHO2Q8TCD6 241 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 MED29Q9NX70 200 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 FBXL17Q9UF56 701 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 NAGKQ9UJ70 344 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 CRYBB2P43320 205 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PPP1CAP62136 330 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 RIGQ13278 110 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 DGAT2L7PQ6IED9 249 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PDPNQ86YL7 162 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 OR1L6Q8NGR2 347 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PRDM7Q9NQW5 492 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PRSS50Q9UI38 385 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 KLF13Q9Y2Y9 288 aaPredicted RBP12.44□□□□□ -0.42
CSPG4-201ENST00000308508 TMEM202A6NGA9 273 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 FRG2CA6NGY1 282 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 B3GALT4O96024 378 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PAQR9Q6ZVX9 377 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 LINC00052Q96N35 136 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 KNL1Q8NG31 2342 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 DNAJC25-GNG10A0A024R161 153 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 TMEM218A2RU14 115 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PGA4P0DJD7 388 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PGA5P0DJD9 388 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 MORN1Q5T089 497 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 SLC37A2Q8TED4 501 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 MEGF10Q96KG7 1140 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 IL2RAP01589 272 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 FGF8P55075 233 aaPredicted RBP12.44□□□□□ -0.42
CSPG4-201ENST00000308508 DLX1P56177 255 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 MTURNQ8N3F0 131 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 ZNF738Q8NE65 137 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 FGF17O60258 216 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 EMDP50402 254 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 IL24Q13007 206 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 OR4A47Q6IF82 309 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 NUFIP2Q7Z417 695 aaKnown RBP12.44□□□□□ -0.42
CSPG4-201ENST00000308508 VN1R1Q9GZP7 353 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PAM16Q9Y3D7 125 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PRRG2O14669 202 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 SOX15O60248 233 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 KLF7O75840 302 aaPredicted RBP12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PNLIPRP2P54317 469 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 ANKRD34AQ69YU3 496 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 C16orf52Q8NHV5 167 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 CA5BP1Q8WTZ4 195 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PHIPQ8WWQ0 1821 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 LRP6O75581 1613 aa12.44□□□□□ -0.42
CSPG4-201ENST00000308508 PDE6DO43924 150 aa12.43□□□□□ -0.42
CSPG4-201ENST00000308508 MELTFP08582 738 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms