RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 RABEPKQ7Z6M1 372 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 RDH5Q92781 318 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 TECTBQ96PL2 329 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 MRPL22Q9NWU5 206 aaKnown RBP17.16■□□□□ 0.34
USP48-201ENST00000308271 ZNF586Q9NXT0 402 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 A0A087X0M5 115 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 A0A1B0GX30 115 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 A0A1W2PPE2 198 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 KLF4O43474 513 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 MPGP29372 298 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 CD81P60033 236 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 RANP62826 216 aaKnown RBP17.16■□□□□ 0.34
USP48-201ENST00000308271 PABPC1L2AQ5JQF8 200 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 FAAP24Q9BTP7 215 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 PECRQ9BY49 303 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 ZNF816-ZNF321PA0A0X1KG74 233 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 MED19A0JLT2 244 aaPredicted RBP17.16■□□□□ 0.34
USP48-201ENST00000308271 ZNF320A2RRD8 509 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 OPN1MWP04001 364 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 OPN1MW2P0DN77 364 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 OPN1MW3P0DN78 364 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 SKP2Q13309 424 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 RPS19BP1Q86WX3 136 aaKnown RBP17.16■□□□□ 0.34
USP48-201ENST00000308271 AGBL5Q8NDL9 886 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 KISS1RQ969F8 398 aaPredicted RBP17.16■□□□□ 0.34
USP48-201ENST00000308271 SARGQ9BW04 601 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 ANXA10Q9UJ72 324 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 MRPS18BQ9Y676 258 aaKnown RBP17.16■□□□□ 0.34
USP48-201ENST00000308271 SPAG17Q6Q759 2223 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 CLDN15P56746 228 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 FAM209BQ5JX69 171 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 SYT13Q7L8C5 426 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 RAB40CQ96S21 281 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 SIRT7Q9NRC8 400 aa17.16■□□□□ 0.34
USP48-201ENST00000308271 UPK3AO75631 287 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 ADRA2AP08913 450 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 CIB3Q96Q77 187 aaPredicted RBP17.15■□□□□ 0.34
USP48-201ENST00000308271 PBX4Q9BYU1 374 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 SMDT1Q9H4I9 107 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 TRBV5-7A0A0A0MS05 114 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 GPR37O15354 613 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 GAPDHP04406 335 aaKnown RBP17.15■□□□□ 0.34
USP48-201ENST00000308271 OR8U8P0C7N1 319 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 RAB4AP20338 218 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 EXTL1Q92935 676 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 SCN3AQ9NY46 2000 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 PPP1R3CQ9UQK1 317 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 B4DEV8 164 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 F6UZH7 168 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 IRF2P14316 349 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 DTYMKP23919 212 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 BHLHE23Q8NDY6 225 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 TMEM37Q8WXS4 190 aa17.15■□□□□ 0.34
USP48-201ENST00000308271 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.14■□□□□ 0.34
USP48-201ENST00000308271 C3orf85A0A1B0GTC6 90 aa17.14■□□□□ 0.34
USP48-201ENST00000308271 SEMA7AO75326 666 aa17.14■□□□□ 0.34
USP48-201ENST00000308271 EN2P19622 333 aaPredicted RBP17.14■□□□□ 0.34
USP48-201ENST00000308271 FAM60AQ9NP50 221 aa17.14■□□□□ 0.34
USP48-201ENST00000308271 POLR2AP24928 1970 aaKnown RBP17.14■□□□□ 0.34
USP48-201ENST00000308271 TDRD15B5MCY1 1934 aaKnown RBP17.14■□□□□ 0.33
USP48-201ENST00000308271 IGHEP01854 428 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 CT45A8P0DMV1 189 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 CT45A9P0DMV2 189 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 PEBP1P30086 187 aaKnown RBP17.14■□□□□ 0.33
USP48-201ENST00000308271 LIMK1P53667 647 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 TMEM241Q24JQ0 296 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 CT45A2Q5DJT8 189 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 FAM58AQ8N1B3 248 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 DAZAP1Q96EP5 407 aaKnown RBP17.14■□□□□ 0.33
USP48-201ENST00000308271 VN1R1Q9GZP7 353 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 B3GAT1Q9P2W7 334 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 YBX2Q9Y2T7 364 aaKnown RBP17.14■□□□□ 0.33
USP48-201ENST00000308271 KCNMB2Q9Y691 235 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 A0A1W2PPC4 97 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 PQLC2LA1A4F0 135 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 BTCP35070 178 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 ZNF808Q8N4W9 903 aaPredicted RBP17.14■□□□□ 0.33
USP48-201ENST00000308271 CALHM2Q9HA72 323 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 A0A1W2PQD3 144 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 CLEC18AA5D8T8 446 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 FAM3AP98173 230 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 VAX1Q5SQQ9 334 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 CLEC18CQ8NCF0 446 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 ASB10Q8WXI3 467 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 LIPGQ9Y5X9 500 aa17.14■□□□□ 0.33
USP48-201ENST00000308271 ADAM20O43506 726 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 PHYHD1Q5SRE7 291 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 NSUN5P2Q63ZY6 315 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 OR8B12Q8NGG6 310 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 GPBAR1Q8TDU6 330 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 RNF133Q8WVZ7 376 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 OR51M1Q9H341 326 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 ZDHHC11Q9H8X9 412 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 PIPOXQ9P0Z9 390 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 EFSO43281 561 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 LIAT1Q6ZQX7 453 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 SIGLECL1Q8N7X8 197 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 MRPL24Q96A35 216 aaKnown RBP17.13■□□□□ 0.33
USP48-201ENST00000308271 ANKRD10Q9NXR5 420 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 ZNF391Q9UJN7 358 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms