RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 LIN7CQ9NUP9 197 aaKnown RBP6.92□□□□□ -1.3
SCN9A-201ENST00000303354 TMSB15BA0A087X1C1 80 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 LRRC3CA6NJW4 275 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 C16orf97H3BN30 126 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 CDKN2AP42771 156 aaKnown RBP6.92□□□□□ -1.3
SCN9A-201ENST00000303354 KIR2DL1P43626 348 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-201ENST00000303354 GPR6P46095 362 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-201ENST00000303354 EGR3Q06889 387 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 KISS1Q15726 138 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 PTOV1Q86YD1 416 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 CCL13Q99616 98 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 DLL4Q9NR61 685 aa6.92□□□□□ -1.3
SCN9A-201ENST00000303354 PRR35P0CG20 571 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 FGF8P55075 233 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ACVR1Q04771 509 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ZIC1Q15915 447 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 M1APQ8TC57 530 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 FLYWCH2Q96CP2 140 aaKnown RBP6.91□□□□□ -1.3
SCN9A-201ENST00000303354 TMEM147Q9BVK8 224 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 EPPINO95925 133 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 PMS2CLQ68D20 193 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF767PQ75MW2 155 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ZAR1Q86SH2 424 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ADGRG3Q86Y34 549 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 CABLES2Q9BTV7 478 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 OR2A25A4D2G3 310 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 TMEM52Q8NDY8 209 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 OR2G2Q8NGZ5 317 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 MZB1Q8WU39 189 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 LEAP2Q969E1 77 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 OR6C68A6NDL8 312 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF354AO60765 605 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-201ENST00000303354 H2AFB1P0C5Y9 115 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 FKBP2P26885 142 aaKnown RBP6.91□□□□□ -1.3
SCN9A-201ENST00000303354 MPGP29372 298 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 OR10A7Q8NGE5 316 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 TTC9Q92623 222 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 C12orf10Q9HB07 376 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 A0A1W2PQF6 199 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 CD40P25942 277 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 TSPO2Q5TGU0 170 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 NUP37Q8NFH4 326 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 OR5H6Q8NGV6 325 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 CDCA4Q9BXL8 241 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 CISD1Q9NZ45 108 aaKnown RBP6.91□□□□□ -1.3
SCN9A-201ENST00000303354 DTX4Q9Y2E6 619 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 INSIG2Q9Y5U4 225 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 PLPP3O14495 311 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 PF4V1P10720 104 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 CASP3P42574 277 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 SLC37A1P57057 533 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 PXT1Q8NFP0 134 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 RHOXF1Q8NHV9 184 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ALG14Q96F25 216 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 DOK1Q99704 481 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 TMEM204Q9BSN7 226 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF416Q9BWM5 594 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 SIRT7Q9NRC8 400 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 LOXL3P58215 753 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 EMC4Q5J8M3 183 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 OR4D10Q8NGI6 311 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 MS4A18H0YCH9 400 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ST8SIA3O43173 380 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 FABP4P15090 132 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 WNT5AP41221 380 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 MS4A18Q3C1V0 323 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 TIGD3Q6B0B8 471 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF574Q6ZN55 896 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-201ENST00000303354 GDPGP1Q6ZNW5 385 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 OR2J1Q9GZK6 312 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF385DQ9H6B1 395 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 PARP11Q9NR21 331 aa6.91□□□□□ -1.3
SCN9A-201ENST00000303354 DNAJB12Q9NXW2 375 aaKnown RBP6.91□□□□□ -1.3
SCN9A-201ENST00000303354 SETD1AO15047 1707 aaKnown RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 C1QCP02747 245 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 CD1BP29016 333 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF266Q14584 549 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 TMED6Q8WW62 240 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 OR51I2Q9H344 312 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 IGHV3-35A0A0C4DH35 117 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 GATCO43716 136 aaKnown RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 MOSPD3O75425 235 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 DUS4LO95620 317 aaKnown RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 PRB4P10163 310 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 SRD5A2P31213 254 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 THBS4P35443 961 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 OVCH2Q7RTZ1 564 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 OR13C8Q8NGS7 320 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 DUSP15Q9H1R2 295 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 SLA2Q9H6Q3 261 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 SPACA1Q9HBV2 294 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 MYO10Q9HD67 2058 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 GEMIN2O14893 280 aaKnown RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 ACOT6Q3I5F7 207 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF787Q6DD87 383 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 OR2Y1Q8NGV0 311 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 MYH15Q9Y2K3 1946 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 LOC101059948A0A1B0GTJ6 334 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 PEBP1P30086 187 aaKnown RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 COL10A1Q03692 680 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms