RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 REPIN1Q9BWE0 567 aaKnown RBP13.26□□□□□ -0.29
SF3B4-201ENST00000271628 METTL9Q9H1A3 318 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 OPA3Q9H6K4 179 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 SESN1Q9Y6P5 492 aa13.26□□□□□ -0.29
SF3B4-201ENST00000271628 FXYD6-FXYD2A0A087WZ82 144 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TMEM82A0PJX8 343 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 OR4E1P0C645 316 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 RPA2P15927 270 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 HIST1H1DP16402 221 aaKnown RBP13.25□□□□□ -0.29
SF3B4-201ENST00000271628 MGMTP16455 207 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 CPT2P23786 658 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 APLNRP35414 380 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 ATP1B3P54709 279 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TMEM65Q6PI78 240 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 GSG1LQ6UXU4 331 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 Q6ZS92 163 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 C1QL2Q7Z5L3 287 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 CHST6Q9GZX3 395 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 FXYD6Q9H0Q3 95 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 POFUT1Q9H488 388 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 ELL3Q9HB65 397 aaPredicted RBP13.25□□□□□ -0.29
SF3B4-201ENST00000271628 SDHAF2Q9NX18 166 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 KLK13Q9UKR3 277 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TNRC6AQ8NDV7 1962 aaKnown RBP13.25□□□□□ -0.29
SF3B4-201ENST00000271628 FAM186AA6NE01 2351 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 A0A0A6YYD4 124 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 A0A1W2PP11 408 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 FAM230AA0A1W2PPH8 454 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 ZNF503-AS2A6NEH8 195 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 MFSD2BA6NFX1 497 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 SOCS1O15524 211 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 NMBP08949 121 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TMEM225BP0DP42 221 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TBPP20226 339 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 GUSBP1Q15486 140 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TFAP2EQ6VUC0 442 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TAAR6Q96RI8 345 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 TM2D1Q9BX74 207 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 REG4Q9BYZ8 158 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 IFT46Q9NQC8 304 aa13.25□□□□□ -0.29
SF3B4-201ENST00000271628 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.25□□□□□ -0.29
SF3B4-201ENST00000271628 MED12LQ86YW9 2145 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 LOC105371267A0A1B0GV96 52 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 RFPL4AA6NLU0 287 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 RFPL4AL1F8VTS6 287 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 CSTBP04080 98 aaKnown RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 SERPINA2P20848 420 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 ZP3P21754 424 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 TMEM50BP56557 158 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 FGL1Q08830 312 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 GK2Q14410 553 aaPredicted RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 HIKESHIQ53FT3 197 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 DCAF12L2Q5VW00 463 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 RTL6Q6ICC9 239 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 RPUSD3Q6P087 351 aaKnown RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 C12orf45Q8N5I9 185 aaPredicted RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 OR6K3Q8NGY3 331 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 PIGCQ92535 297 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 PCDHB16Q9NRJ7 776 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 PLEKHA6Q9Y2H5 1048 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 PRRC2CQ9Y520 2896 aaKnown RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 DISC1C4P0D8 188 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 AMY2AP04746 511 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 HOXB1P14653 301 aaPredicted RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 CBX5P45973 191 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 UBE2MP61081 183 aaKnown RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 PLAC9Q5JTB6 97 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 LPCAT3Q6P1A2 487 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 MYO7BQ6PIF6 2116 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 Q6ZT83 130 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 MOB3CQ70IA8 216 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 MRPL21Q7Z2W9 205 aaKnown RBP13.24□□□□□ -0.29
SF3B4-201ENST00000271628 CSNK2A3Q8NEV1 391 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 NUDCD2Q8WVJ2 157 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 PFDN2Q9UHV9 154 aa13.24□□□□□ -0.29
SF3B4-201ENST00000271628 CEP250Q9BV73 2442 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 FCER2P06734 321 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 ZNF735P0CB33 412 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 CCL2P13500 99 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 ZMYND11Q15326 602 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 RSU1Q15404 277 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 RNASE10Q5GAN6 216 aaKnown RBP13.23□□□□□ -0.29
SF3B4-201ENST00000271628 PLCXD3Q63HM9 321 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 ALKAL2Q6UX46 152 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 ASCL4Q6XD76 172 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 SLC51BQ86UW2 128 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 GCNT2Q8N0V5 402 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 BPIFB2Q8N4F0 458 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 OR5L1Q8NGL2 311 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 OR5M9Q8NGP3 310 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 PRRT1Q99946 306 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 MFFQ9GZY8 342 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 SLC2A8Q9NY64 477 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 KCNK7Q9Y2U2 307 aa13.23□□□□□ -0.29
SF3B4-201ENST00000271628 KRBOX1C9JBD0 128 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 MFNGO00587 321 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 SCO1O75880 301 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 CD8AP01732 235 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 FOXC1Q12948 553 aa13.22□□□□□ -0.29
SF3B4-201ENST00000271628 SLC38A6Q8IZM9 456 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms