RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 FBXO17Q96EF6 278 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 SF3B5Q9BWJ5 86 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 RBM24Q9BX46 236 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 SLC39A1Q9NY26 324 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 C14orf166Q9Y224 244 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 CARHSP1Q9Y2V2 147 aaKnown RBP11.16□□□□□ -0.62
LINC00540-203ENST00000631321 MEMO1Q9Y316 297 aa11.16□□□□□ -0.62
LINC00540-203ENST00000631321 NCOA6Q14686 2063 aaPredicted RBP11.15□□□□□ -0.62
LINC00540-203ENST00000631321 A0A0J9YW62 118 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 TAAR5O14804 337 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 KLF7O75840 302 aaPredicted RBP11.15□□□□□ -0.62
LINC00540-203ENST00000631321 IFNA2P01563 188 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 CTSDP07339 412 aaPredicted RBP11.15□□□□□ -0.62
LINC00540-203ENST00000631321 DBHP09172 617 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 H2AFB1P0C5Y9 115 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 ADCYAP1P18509 176 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 SVBPQ8N300 66 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 BOLLQ8N9W6 283 aaKnown RBP11.15□□□□□ -0.62
LINC00540-203ENST00000631321 OR51F2Q8NH61 342 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 ADAMTS17Q8TE56 1095 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 PIGTQ969N2 578 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 ZNF775Q96BV0 537 aaPredicted RBP11.15□□□□□ -0.62
LINC00540-203ENST00000631321 ULBP2Q9BZM5 246 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 PLEK2Q9NYT0 353 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 DKKL1Q9UK85 242 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 EDARQ9UNE0 448 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 HS3ST3B1Q9Y662 390 aa11.15□□□□□ -0.62
LINC00540-203ENST00000631321 IGKV1D-8A0A087WSZ0 117 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 MSTNO14793 375 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 ARHGDIBP52566 201 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 RAB35Q15286 201 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 SNAI3Q3KNW1 292 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 KRTAP27-1Q3LI81 207 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 RPUSD3Q6P087 351 aaKnown RBP11.15□□□□□ -0.63
LINC00540-203ENST00000631321 C6orf201Q7Z4U5 140 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 SEMA6DQ8NFY4 1073 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 IFI44Q8TCB0 444 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 SAT2Q96F10 170 aaPredicted RBP11.15□□□□□ -0.63
LINC00540-203ENST00000631321 TSNAXQ99598 290 aaKnown RBP11.15□□□□□ -0.63
LINC00540-203ENST00000631321 C1orf123Q9NWV4 160 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 LPAR3Q9UBY5 353 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 PILRBQ9UKJ0 227 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 HSF4Q9ULV5 492 aa11.15□□□□□ -0.63
LINC00540-203ENST00000631321 PTRH2Q9Y3E5 179 aaKnown RBP11.15□□□□□ -0.63
LINC00540-203ENST00000631321 GDF9O60383 454 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 MLF1P58340 268 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 EIF5AP63241 154 aaKnown RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 RBM39Q14498 530 aaKnown RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 PUSL1Q8N0Z8 303 aaKnown RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 OR4A4PQ8NGN8 299 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF837Q96EG3 531 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 SMIM8Q96KF7 97 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 SRXN1Q9BYN0 137 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 FSCN3Q9NQT6 498 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF629Q9UEG4 869 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 MED12Q93074 2177 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 GJE1A6NN92 205 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 YKT6O15498 198 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 SYNGR3O43761 229 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 CBR3O75828 277 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 TSPAN9O75954 239 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 PLATP00750 562 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 SERPINA5P05154 406 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 KLK3P07288 261 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 CST2P09228 141 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 ACKR3P25106 362 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 RBMXP38159 391 aaKnown RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 B3GALT5-AS1P59052 145 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 PMS2CLQ68D20 193 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 PLXDC2Q6UX71 529 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 ASCL4Q6XD76 172 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 GPR137CQ8N3F9 429 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 METTL9Q9H1A3 318 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 ELL3Q9HB65 397 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 PCDHB16Q9NRJ7 776 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 RYDENQ9NUL5 291 aaKnown RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF701Q9NV72 531 aaPredicted RBP11.14□□□□□ -0.63
LINC00540-203ENST00000631321 PLEKHJ1Q9NW61 149 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 TUBD1Q9UJT1 453 aa11.14□□□□□ -0.63
LINC00540-203ENST00000631321 TMEM265A0A087WTH1 108 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 CCDC163A0A0D9SF12 145 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 CRYM-AS1A6NIL9 109 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 GPR31O00270 319 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 TNFSF11O14788 317 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 HOXB5P09067 269 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 HKR1P10072 659 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF708P17019 499 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 DTYMKP23919 212 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 HOXA6P31267 233 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 RAC3P60763 192 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 SCRN3Q0VDG4 424 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 PJVKQ0ZLH3 352 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 TRA2AQ13595 282 aaKnown RBP eCLIP11.13□□□□□ -0.63
LINC00540-203ENST00000631321 GALNTL5Q7Z4T8 443 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 AGBL5Q8NDL9 886 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 OR2Y1Q8NGV0 311 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 MR1Q95460 341 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 CPNE2Q96FN4 548 aaPredicted RBP11.13□□□□□ -0.63
LINC00540-203ENST00000631321 CNTNAP3BQ96NU0 1288 aa11.13□□□□□ -0.63
LINC00540-203ENST00000631321 ZNF2Q9BSG1 426 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms