RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TEX36Q5VZQ5 186 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 ZNF573Q86YE8 665 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 PP6455Q8WZ26 134 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 GGHQ92820 318 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 COMMD4Q9H0A8 199 aa17.31■□□□□ 0.36
CLN3-240ENST00000631023 POLR3KQ9Y2Y1 108 aaPredicted RBP17.31■□□□□ 0.36
CLN3-240ENST00000631023 A8MXK9 166 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 SRRM5B3KS81 715 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 J3QLI3 93 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 FAM157CP0CG43 387 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 EGR1P18146 543 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 PITPNBP48739 271 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 TGM4P49221 684 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 SEC61A1P61619 476 aaKnown RBP17.3■□□□□ 0.36
CLN3-240ENST00000631023 HOXA4Q00056 320 aaPredicted RBP17.3■□□□□ 0.36
CLN3-240ENST00000631023 TEX29Q8N6K0 151 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 CHST5Q9GZS9 411 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 CLN8Q9UBY8 286 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 OR5V1Q9UGF6 321 aa17.3■□□□□ 0.36
CLN3-240ENST00000631023 TMEM212A6NML5 194 aa17.29■□□□□ 0.36
CLN3-240ENST00000631023 PHF1O43189 567 aaPredicted RBP17.29■□□□□ 0.36
CLN3-240ENST00000631023 ATP6V1G2O95670 118 aa17.29■□□□□ 0.36
CLN3-240ENST00000631023 HAGHLQ6PII5 290 aaPredicted RBP17.29■□□□□ 0.36
CLN3-240ENST00000631023 LYPD2Q6UXB3 125 aa17.29■□□□□ 0.36
CLN3-240ENST00000631023 FAM90A1Q86YD7 464 aa17.29■□□□□ 0.36
CLN3-240ENST00000631023 BPIFB6Q8NFQ5 453 aa17.29■□□□□ 0.36
CLN3-240ENST00000631023 OR5AK2Q8NH90 309 aa17.29■□□□□ 0.36
CLN3-240ENST00000631023 C12orf43Q96C57 262 aaKnown RBP17.29■□□□□ 0.36
CLN3-240ENST00000631023 PSORS1C1Q9UIG5 152 aa17.29■□□□□ 0.36
CLN3-240ENST00000631023 TRBV2A0A0J9YWF9 115 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 PQLC2LA1A4F0 135 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 ADAM20O43506 726 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 GYPAP02724 150 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 ZNF20P17024 532 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 SRD5A1P18405 259 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 HSPA13P48723 471 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 NPY4RP50391 375 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 CCDC58Q4VC31 144 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 RPL22L1Q6P5R6 122 aaKnown RBP17.28■□□□□ 0.36
CLN3-240ENST00000631023 STX19Q8N4C7 294 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 OR13C3Q8NGS6 347 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 AQP3Q92482 292 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 ERVK-18Q9QC07 812 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 DNAJB11Q9UBS4 358 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 IGHV3OR15-7A0A075B7D8 119 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 E9PI62 339 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 TNFRSF13BO14836 293 aaPredicted RBP17.28■□□□□ 0.36
CLN3-240ENST00000631023 AKR7A2O43488 359 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 XPNPEP2O43895 674 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 ZFPL1O95159 310 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 SRP14P37108 136 aaKnown RBP17.28■□□□□ 0.36
CLN3-240ENST00000631023 HAAOP46952 286 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 FUT6P51993 359 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 CNN3Q15417 329 aaKnown RBP17.28■□□□□ 0.36
CLN3-240ENST00000631023 UBE2V2Q15819 145 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 OR2G6Q5TZ20 316 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 LAIR2Q6ISS4 152 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 IL17RELQ6ZVW7 336 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 FGGYQ96C11 551 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 POLDIP2Q9Y2S7 368 aa17.28■□□□□ 0.36
CLN3-240ENST00000631023 FAM230AA0A1W2PPH8 454 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 KIAA1324LA8MWY0 1029 aaPredicted RBP17.27■□□□□ 0.35
CLN3-240ENST00000631023 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.27■□□□□ 0.35
CLN3-240ENST00000631023 RHBDL1O75783 438 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 IFNA2P01563 188 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 GLRA1P23415 457 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 GMFBP60983 142 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 WDR25Q64LD2 544 aaPredicted RBP17.27■□□□□ 0.35
CLN3-240ENST00000631023 IZUMO2Q6UXV1 221 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 AHSA2Q719I0 299 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 OR52N1Q8NH53 320 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 ADAT3Q96EY9 351 aaPredicted RBP17.27■□□□□ 0.35
CLN3-240ENST00000631023 C7orf69Q9H7B7 122 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 BABAM2Q9NXR7 383 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 SCN3BQ9NY72 215 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 KAAG1Q9UBP8 84 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 CLEC2DQ9UHP7 191 aa17.27■□□□□ 0.35
CLN3-240ENST00000631023 MXRA5Q9NR99 2828 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 TRAPPC2LH3BP13 241 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 J3QT63 122 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 TMPRSS2O15393 492 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 GTF2A1P52655 376 aaPredicted RBP17.26■□□□□ 0.35
CLN3-240ENST00000631023 C6orf141Q5SZD1 244 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 ZNF841Q6ZN19 808 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 UTS2BQ765I0 119 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 SLC36A1Q7Z2H8 476 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 TRMT10AQ8TBZ6 339 aaKnown RBP17.26■□□□□ 0.35
CLN3-240ENST00000631023 TMIGD2Q96BF3 282 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 PDCD1LG2Q9BQ51 273 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 WDR13Q9H1Z4 485 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 MMP26Q9NRE1 261 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 RASL12Q9NYN1 266 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 SVEP1Q4LDE5 3571 aa17.26■□□□□ 0.35
CLN3-240ENST00000631023 OCM2P0CE71 109 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 OCMP0CE72 109 aaPredicted RBP17.25■□□□□ 0.35
CLN3-240ENST00000631023 PRKACBP22694 351 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 CD276Q5ZPR3 534 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 BTNL3Q6UXE8 466 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 OR51A4Q8NGJ6 313 aa17.25■□□□□ 0.35
CLN3-240ENST00000631023 OR10AC1Q8NH08 325 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms