RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CACNA1DQ01668 2161 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 C20orf202A1L168 122 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 OR4C45A6NMZ5 311 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 CYR61O00622 381 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 ADAP1O75689 374 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 CST4P01036 141 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 PATE4P0C8F1 98 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 IL3RAP26951 378 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 OR3A4PP47883 348 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 GSK3AP49840 483 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 DHODHQ02127 395 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 FUT7Q11130 342 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 MESTQ5EB52 335 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 Q7L0L9 218 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 TSEN54Q7Z6J9 526 aaKnown RBP12.49□□□□□ -0.41
CPSF1-212ENST00000616140 ATG4DQ86TL0 474 aaPredicted RBP12.49□□□□□ -0.41
CPSF1-212ENST00000616140 C12orf57Q99622 126 aa12.49□□□□□ -0.41
CPSF1-212ENST00000616140 DLEC1Q9Y238 1755 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 CENPVL1A0A0U1RR11 272 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 A0A1W2PPQ1 181 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 FIGNL2A6NMB9 653 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 K7EQS6 105 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 DUS4LO95620 317 aaKnown RBP12.48□□□□□ -0.41
CPSF1-212ENST00000616140 OR10J4P0C629 311 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 RD3LP0DJH9 198 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 RPS23P62266 143 aaKnown RBP12.48□□□□□ -0.41
CPSF1-212ENST00000616140 RAB35Q15286 201 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 MIDNQ504T8 468 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.48□□□□□ -0.41
CPSF1-212ENST00000616140 MITD1Q8WV92 249 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 PCED1AQ9H1Q7 454 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 P4HTMQ9NXG6 502 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 PMS2P1A4D2B8 440 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 SHISA7A6NL88 538 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 PRSS44E7EML9 344 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 CNIH1O95406 144 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 ZP3P21754 424 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 ZFP36L2P47974 494 aaKnown RBP12.48□□□□□ -0.41
CPSF1-212ENST00000616140 LGALS4P56470 323 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 ANGPTL6Q8NI99 470 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 TRMT61AQ96FX7 289 aaKnown RBP12.48□□□□□ -0.41
CPSF1-212ENST00000616140 SLC35E1Q96K37 410 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 LURAP1Q96LR2 239 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 S1PR3Q99500 378 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 RAB18Q9NP72 206 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 IGHV1OR15-9A0A0B4J2B8 117 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 TO15178 435 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 OR7C2O60412 319 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 MOSPD3O75425 235 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 GUK1Q16774 197 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF561Q8N587 486 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 ERGIC1Q969X5 290 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 C12orf10Q9HB07 376 aa12.48□□□□□ -0.41
CPSF1-212ENST00000616140 MEX3AA1L020 520 aaKnown RBP12.47□□□□□ -0.41
CPSF1-212ENST00000616140 OR5H15A6NDH6 313 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 PJVKQ0ZLH3 352 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 MPPED2Q15777 294 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ANKRD37Q7Z713 158 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ABI3BPQ7Z7G0 1075 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 SLC38A6Q8IZM9 456 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 EDARADDQ8WWZ3 215 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 CIB3Q96Q77 187 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-212ENST00000616140 PLA2G3Q9NZ20 509 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 TRAV8-7A0A075B6U6 113 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 TERTO14746 1132 aaKnown RBP12.47□□□□□ -0.41
CPSF1-212ENST00000616140 SFT2D2O95562 160 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 TMEM11P17152 192 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 LIMK1P53667 647 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 GNG3P63215 75 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 TIGITQ495A1 244 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 NARFLQ9H6Q4 476 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF331Q9NQX6 463 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-212ENST00000616140 WBP1LQ9NX94 342 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ARFGEF1Q9Y6D6 1849 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 SPINT1O43278 529 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ONECUT2O95948 504 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF90Q03938 601 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 TXN2Q99757 166 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ARRDC1-AS1Q9H2J1 176 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 MTCH1Q9NZJ7 389 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 NDRG3Q9UGV2 375 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 PROCRQ9UNN8 238 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 V9GYS6 101 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 PIKFYVEQ9Y2I7 2098 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 LANCL1O43813 399 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 S100A8P05109 93 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 SLC25A4P12235 298 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 MLF1P58340 268 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 ZNF816Q0VGE8 651 aaPredicted RBP12.47□□□□□ -0.41
CPSF1-212ENST00000616140 TMEM52Q8NDY8 209 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 BPIFCQ8NFQ6 507 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 GALMQ96C23 342 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 USB1Q9BQ65 265 aaKnown RBP12.47□□□□□ -0.41
CPSF1-212ENST00000616140 COMMD5Q9GZQ3 224 aa12.47□□□□□ -0.41
CPSF1-212ENST00000616140 SFTA3P0C7M3 94 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 HNF1AP20823 631 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 PRDX4Q13162 271 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 PHYHD1Q5SRE7 291 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 C1QTNF12Q5T7M4 302 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 C1orf53Q5VUE5 145 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms