RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CPNE2Q96FN4 548 aaPredicted RBP12.18□□□□□ -0.46
USP39-220ENST00000613444 LPAR5Q9H1C0 372 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 ATG5Q9H1Y0 275 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 ZNF732B4DXR9 585 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 RAB27BO00194 218 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 CTDSPLO15194 276 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 SPRY1O43609 319 aaPredicted RBP12.18□□□□□ -0.46
USP39-220ENST00000613444 ANGPTL7O43827 346 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 CDC14BO60729 498 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 TPPPO94811 219 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 TAS2R20P59543 309 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 SORDQ00796 357 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 SLC22A6Q4U2R8 563 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 TMEM69Q5SWH9 247 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 Q6ZR03 302 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 LRP11Q86VZ4 500 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 NUP37Q8NFH4 326 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 OR8G5Q8NG78 346 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 KCNG3Q8TAE7 436 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 KCNJ16Q9NPI9 418 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 ING4Q9UNL4 249 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 MRPS7Q9Y2R9 242 aaKnown RBP12.18□□□□□ -0.46
USP39-220ENST00000613444 SPEF1Q9Y4P9 236 aa12.18□□□□□ -0.46
USP39-220ENST00000613444 CHD3Q12873 2000 aaKnown RBP12.17□□□□□ -0.46
USP39-220ENST00000613444 A0A0A6YYD4 124 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 B8ZZF3 427 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 MLNRO43193 412 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 TMEM225BP0DP42 221 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 RANBP1P43487 201 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 FAM76BQ5HYJ3 339 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 WDR86Q86TI4 376 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 CDH24Q86UP0 819 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 OR8H2Q8N162 312 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 PXT1Q8NFP0 134 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 OR10K1Q8NGX5 313 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 TRIM63Q969Q1 353 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 RNF170Q96K19 258 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 GAL3ST1Q99999 423 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 BANF2Q9H503 90 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 RABL2AQ9UBK7 228 aaPredicted RBP12.17□□□□□ -0.46
USP39-220ENST00000613444 RABL2BQ9UNT1 228 aa12.17□□□□□ -0.46
USP39-220ENST00000613444 KMT2BQ9UMN6 2715 aaPredicted RBP12.17□□□□□ -0.46
USP39-220ENST00000613444 IGLV3-9A0A075B6K5 115 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 A0A1W2PQ09 198 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 OR5B21A6NL26 309 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 H0YL77 283 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 ABCD4O14678 606 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 LANCL1O43813 399 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 MPIG6BO95866 241 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 PLATP00750 562 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 PTHLHP12272 177 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 GCH1P30793 250 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 DNM1P46Q6ZS02 220 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 ZNF611Q8N823 705 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 LINC01560Q8TB33 94 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 ITLN2Q8WWU7 325 aaPredicted RBP12.16□□□□□ -0.46
USP39-220ENST00000613444 GCDHQ92947 438 aaPredicted RBP12.16□□□□□ -0.46
USP39-220ENST00000613444 NICN1Q9BSH3 213 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 IL36GQ9NZH8 169 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 A0A0A6YYH2 397 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 A6NJ64 397 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 ZG16O60844 167 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 C1QL1O75973 258 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 IGHV3-13P01766 116 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 GNG3P63215 75 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 DGCR2P98153 550 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 PITPNAQ00169 270 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 PIAS4Q8N2W9 510 aaPredicted RBP12.16□□□□□ -0.46
USP39-220ENST00000613444 ZNF843Q8N446 348 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 ZSCAN4Q8NAM6 433 aaPredicted RBP12.16□□□□□ -0.46
USP39-220ENST00000613444 YIPF5Q969M3 257 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 RADILQ96JH8 1075 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 HIST1H2AAQ96QV6 131 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 ADAT1Q9BUB4 502 aaKnown RBP12.16□□□□□ -0.46
USP39-220ENST00000613444 TMEM59Q9BXS4 323 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 CST11Q9H112 138 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 OR51I2Q9H344 312 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 DIABLOQ9NR28 239 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 TBC1D24Q9ULP9 559 aa12.16□□□□□ -0.46
USP39-220ENST00000613444 ISPDA4D126 451 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 GSTZ1O43708 216 aaPredicted RBP12.15□□□□□ -0.46
USP39-220ENST00000613444 TIMM8AO60220 97 aaPredicted RBP12.15□□□□□ -0.46
USP39-220ENST00000613444 CRTAPO75718 401 aaPredicted RBP12.15□□□□□ -0.46
USP39-220ENST00000613444 MGMTP16455 207 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 SERPINA2P20848 420 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 AGAP20933 346 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 HAAOP46952 286 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 RPS27AP62979 156 aaKnown RBP12.15□□□□□ -0.46
USP39-220ENST00000613444 NCMAPQ5T1S8 102 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 SLC25A26Q70HW3 274 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 FAM89BQ8N5H3 189 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 ACBD4Q8NC06 268 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 Q8NFD4 153 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 SMIM4Q8WVI0 70 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 TM2D1Q9BX74 207 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 METTL9Q9H1A3 318 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 OCEL1Q9H607 264 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 NPDC1Q9NQX5 325 aaPredicted RBP12.15□□□□□ -0.46
USP39-220ENST00000613444 TMEM100Q9NV29 134 aa12.15□□□□□ -0.46
USP39-220ENST00000613444 TRAV18A0A075B6X5 111 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms