RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 METAP1DQ6UB28 335 aaPredicted RBP8.66□□□□□ -1.02
LIG3-216ENST00000593099 CLEC9AQ6UXN8 241 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 ZNF695Q8IW36 515 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 OR5B12Q96R08 314 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 MESP1Q9BRJ9 268 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 RALYQ9UKM9 306 aaKnown RBP8.66□□□□□ -1.02
LIG3-216ENST00000593099 PRELID3BQ9Y3B1 194 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 LIPGQ9Y5X9 500 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 OR5B21A6NL26 309 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 C17orf51A8MQB3 221 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 ZIC3O60481 467 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 GLAP06280 429 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 TGM1P22735 817 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 LRRC10Q5BKY1 277 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 LYPD8Q6UX82 237 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 RBMS3Q6XE24 437 aaKnown RBP8.66□□□□□ -1.02
LIG3-216ENST00000593099 C1orf174Q8IYL3 243 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 FADS6Q8N9I5 356 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 SLC26A10Q8NG04 563 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 ZPLD1Q8TCW7 415 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 CHPT1Q8WUD6 406 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 SPIN2AQ99865 258 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 SPIN2BQ9BPZ2 258 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 SRXN1Q9BYN0 137 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 TINAGQ9UJW2 476 aa8.66□□□□□ -1.02
LIG3-216ENST00000593099 A0A1W2PNV4 684 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 NEURL1O76050 574 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 PTTG1IPP53801 180 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 TNK1Q13470 666 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 TAF9Q16594 264 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 NOXA1Q86UR1 476 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 C20orf196Q8IYI0 205 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 ZFP82Q8N141 532 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 GPA33Q99795 319 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 NKX3-1Q99801 234 aaPredicted RBP8.65□□□□□ -1.02
LIG3-216ENST00000593099 UNKLQ9H9P5 680 aaKnown RBP8.65□□□□□ -1.02
LIG3-216ENST00000593099 RPS10P5Q9NQ39 176 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 GSTP1P09211 210 aaKnown RBP8.65□□□□□ -1.02
LIG3-216ENST00000593099 C19orf57Q0VDD7 668 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 SOWAHCQ53LP3 525 aaPredicted RBP8.65□□□□□ -1.02
LIG3-216ENST00000593099 ELP2Q6IA86 826 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 TFAP2EQ6VUC0 442 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 STAC2Q6ZMT1 411 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 CMTM4Q8IZR5 234 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 BPIFB2Q8N4F0 458 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 CXXC4Q9H2H0 198 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 DNAJC13O75165 2243 aa8.65□□□□□ -1.02
LIG3-216ENST00000593099 PPP1R2P9O14990 202 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 CREBL2O60519 120 aaPredicted RBP8.65□□□□□ -1.03
LIG3-216ENST00000593099 CBR1P16152 277 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 GNB2P62879 340 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 AGAP6Q5VW22 663 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 HACD4Q5VWC8 232 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 ABLIM2Q6H8Q1 611 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 ZNF596Q8TC21 504 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 PBDC1Q9BVG4 233 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 A6NHS1 94 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 LYRM1O43325 122 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 LIMS3P0CW19 117 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 LIMS4P0CW20 117 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 ZNF708P17019 499 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 OPRL1P41146 370 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 TLE1Q04724 770 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 CDONQ4KMG0 1287 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 MEX3BQ6ZN04 569 aaKnown RBP8.65□□□□□ -1.03
LIG3-216ENST00000593099 DBX2Q6ZNG2 339 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 GPX7Q96SL4 187 aaPredicted RBP8.65□□□□□ -1.03
LIG3-216ENST00000593099 RHNO1Q9BSD3 238 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 FOXJ3Q9UPW0 622 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 PPP1R3CQ9UQK1 317 aa8.65□□□□□ -1.03
LIG3-216ENST00000593099 A0A1B0GV72 72 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 K7ENP7 123 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 CDC34P49427 236 aaPredicted RBP8.64□□□□□ -1.03
LIG3-216ENST00000593099 ASCL1P50553 236 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 SRSF6Q13247 344 aaKnown RBP8.64□□□□□ -1.03
LIG3-216ENST00000593099 OSR2Q8N2R0 312 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 OR4D10Q8NGI6 311 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 KIRREL1Q96J84 757 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 ZMAT3Q9HA38 289 aaKnown RBP8.64□□□□□ -1.03
LIG3-216ENST00000593099 ELOVL5Q9NYP7 299 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 NLKQ9UBE8 527 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 ST3GAL6Q9Y274 331 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 RPS10-NUDT3A0A1W2PQS6 291 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 GPX5O75715 221 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 CTXN2P0C2S0 81 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 PAX6P26367 422 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 RPS10P46783 165 aaKnown RBP8.64□□□□□ -1.03
LIG3-216ENST00000593099 LIMS1P48059 325 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 DMRTC1Q5HYR2 192 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 LPCAT3Q6P1A2 487 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 CDC20BQ86Y33 519 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 OR4M1Q8NGD0 313 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 SLC25A40Q8TBP6 338 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 VOPP1Q96AW1 172 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 ZNF436Q9C0F3 470 aaPredicted RBP8.64□□□□□ -1.03
LIG3-216ENST00000593099 ASCL3Q9NQ33 180 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 CACNG2Q9Y698 323 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 IGKV1D-42A0A075B6H8 117 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 MS4A18H0YCH9 400 aa8.64□□□□□ -1.03
LIG3-216ENST00000593099 CYB5BO43169 146 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms