RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PPA1Q15181 289 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 TMEM211Q6ICI0 200 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 RAB12Q6IQ22 244 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 FBXW12Q6X9E4 464 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 KRT74Q7RTS7 529 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 TOMM5Q8N4H5 51 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 CELF2-AS1Q8N7Q2 184 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 FAM169BQ8N8A8 192 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 CHST4Q8NCG5 386 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 ST6GALNAC3Q8NDV1 305 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 BHLHE23Q8NDY6 225 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 STEAP2Q8NFT2 490 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 HPSE2Q8WWQ2 592 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 VKORC1Q9BQB6 163 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 NICN1Q9BSH3 213 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 TMEM59Q9BXS4 323 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 OR2J1Q9GZK6 312 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 ACTR6Q9GZN1 396 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 CST11Q9H112 138 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 NPAP1Q9NZP6 1156 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 GHRLQ9UBU3 117 aa9.03□□□□□ -0.96
SS18-217ENST00000580958 ZNF629Q9UEG4 869 aaPredicted RBP9.03□□□□□ -0.96
SS18-217ENST00000580958 RBMX2Q9Y388 322 aaKnown RBP9.03□□□□□ -0.96
SS18-217ENST00000580958 DIDO1Q9BTC0 2240 aaKnown RBP9.03□□□□□ -0.96
SS18-217ENST00000580958 FAM240BA0A1B0GVZ2 78 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 MEIS3P1A6NDR6 274 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 M0R1B8 84 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 HTR3BO95264 441 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 CHRM2P08172 466 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 MGMTP16455 207 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 CCKARP32238 428 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 PRSS3P35030 304 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 CA7P43166 264 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 BCAP31P51572 246 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 RPS27AP62979 156 aaKnown RBP9.02□□□□□ -0.97
SS18-217ENST00000580958 RSU1Q15404 277 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 CEACAM21Q3KPI0 293 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 ZNF260Q3ZCT1 412 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 TMEM255AQ5JRV8 349 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 DNM1P46Q6ZS02 220 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 RTN4RL2Q86UN3 420 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 GLCCI1Q86VQ1 547 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 FTMTQ8N4E7 242 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 OR51T1Q8NGJ9 327 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 OR10R2Q8NGX6 335 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 RND1Q92730 232 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 MUCL1Q96DR8 90 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 ITPKCQ96DU7 683 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 URM1Q9BTM9 101 aaKnown RBP9.02□□□□□ -0.97
SS18-217ENST00000580958 SELENOIQ9C0D9 397 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 METTL9Q9H1A3 318 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 MMP28Q9H239 520 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 RBFOX1Q9NWB1 397 aaKnown RBP9.02□□□□□ -0.97
SS18-217ENST00000580958 ELOVL5Q9NYP7 299 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 JKAMPQ9P055 326 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 ELF5Q9UKW6 265 aaPredicted RBP9.02□□□□□ -0.97
SS18-217ENST00000580958 MEMO1Q9Y316 297 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 PLCE1Q9P212 2302 aa9.02□□□□□ -0.97
SS18-217ENST00000580958 IGKV1-12A0A0C4DH73 117 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 ANKRD20A5PA0PJZ0 165 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 PQLC2LA1A4F0 135 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 TMEM235A6NFC5 223 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 ZNF732B4DXR9 585 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 H7C417 338 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 SULT1C2O00338 296 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 SOCS1O15524 211 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 SCGNO76038 276 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 ECDO95905 644 aaPredicted RBP9.01□□□□□ -0.97
SS18-217ENST00000580958 IGKV1D-12P01611 117 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 MT-ND4P03905 459 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 GSTT2BP0CG30 244 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 RAC2P15153 192 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 SELEP16581 610 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 CA6P23280 308 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 BTCP35070 178 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 MPV17P39210 176 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 RAD52P43351 418 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 GPM6AP51674 278 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 NAAAQ02083 359 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 PDZK1IP1Q13113 114 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 IGFBP7Q16270 282 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 ALKBH6Q3KRA9 238 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 C3orf36Q3SXR2 165 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 CDNFQ49AH0 187 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 PCSK4Q6UW60 755 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 ASCL4Q6XD76 172 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 Q6ZTK2 550 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 CDH24Q86UP0 819 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 CALHM1Q8IU99 346 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 PXT1Q8NFP0 134 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 OR56B1Q8NGI3 324 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 PRR7Q8TB68 274 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 GPX8Q8TED1 209 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 OR5P3Q8WZ94 311 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 AQP3Q92482 292 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 MARS2Q96GW9 593 aaKnown RBP9.01□□□□□ -0.97
SS18-217ENST00000580958 ZC3HAV1LQ96H79 300 aaKnown RBP9.01□□□□□ -0.97
SS18-217ENST00000580958 HIST1H2AAQ96QV6 131 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 C7orf50Q9BRJ6 194 aaKnown RBP9.01□□□□□ -0.97
SS18-217ENST00000580958 NUDT16L1Q9BRJ7 211 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms