RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PPIBP23284 216 aaKnown RBP12.45□□□□□ -0.42
VPS53-218ENST00000575207 SLC9A3P48764 834 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 SLC7A2P52569 658 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 KRR1Q13601 381 aaKnown RBP12.45□□□□□ -0.42
VPS53-218ENST00000575207 NANOGP8Q6NSW7 305 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 DRAM2Q6UX65 266 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 ZBTB49Q6ZSB9 765 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 MSRB3Q8IXL7 192 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 SPSB4Q96A44 273 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 CLEC7AQ9BXN2 247 aa12.45□□□□□ -0.42
VPS53-218ENST00000575207 MEX3AA1L020 520 aaKnown RBP12.44□□□□□ -0.42
VPS53-218ENST00000575207 XRCC2O43543 280 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 OR8U9P0C7N5 309 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 FAM106CPP0CH98 169 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 DCTDP32321 178 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 GPR12P47775 334 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 POLR2JP52435 117 aaKnown RBP12.44□□□□□ -0.42
VPS53-218ENST00000575207 CD177Q8N6Q3 437 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 OR13C2Q8NGS9 318 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 TMED9Q9BVK6 235 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 GLS2Q9UI32 602 aa12.44□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A18PA6NE21 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A16PA6NEW6 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A20PA6NIJ5 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 RFPL4AA6NLU0 287 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A9PA6NNJ1 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A12PA8MX19 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A5PA8MXJ8 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 RFPL4AL1F8VTS6 287 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 SDHDO14521 159 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 IGHG4P01861 327 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A15PP0C7V4 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A13PP0C7W8 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A14PP0C7W9 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM90A24PP0C7X0 464 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 OTX1P32242 354 aaPredicted RBP12.43□□□□□ -0.42
VPS53-218ENST00000575207 ABCE1P61221 599 aaKnown RBP12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM3AP98173 230 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 CFHR3Q02985 330 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 PIN1Q13526 163 aaPredicted RBP12.43□□□□□ -0.42
VPS53-218ENST00000575207 RBMY1FQ15415 496 aaKnown RBP12.43□□□□□ -0.42
VPS53-218ENST00000575207 KCTD8Q6ZWB6 473 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 SLC16A9Q7RTY1 509 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 THNSL2Q86YJ6 484 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 Q8N1X5 172 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 ZNF676Q8N7Q3 588 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 FAM156AQ8NDB6 213 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 UBE2E2Q96LR5 201 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 TSSK2Q96PF2 358 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 POLR2J2Q9GZM3 115 aaKnown RBP12.43□□□□□ -0.42
VPS53-218ENST00000575207 C20orf27Q9GZN8 174 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 POLR2J3Q9H1A7 115 aaKnown RBP12.43□□□□□ -0.42
VPS53-218ENST00000575207 TMEM133Q9H2Q1 129 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 IKZF5Q9H5V7 419 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 CHCHD3Q9NX63 227 aaKnown RBP12.43□□□□□ -0.42
VPS53-218ENST00000575207 ZIM2Q9NZV7 527 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 DNAJB9Q9UBS3 223 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 CYB5R1Q9UHQ9 305 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 RHBDD3Q9Y3P4 386 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 N6AMT1Q9Y5N5 214 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 SESN1Q9Y6P5 492 aa12.43□□□□□ -0.42
VPS53-218ENST00000575207 DCTN6O00399 190 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 CDK2AP2O75956 126 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 IGLV1-51P01701 117 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 SHBGP04278 402 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 GPX2P18283 190 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 PSMB8P28062 276 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 CRABP1P29762 137 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 ISL1P61371 349 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 ESRRGP62508 458 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 GNB1P62873 340 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 BDH1Q02338 343 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 LRIF1Q5T3J3 769 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 GPR139Q6DWJ6 353 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 DNM1P34Q6PK57 102 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 CCDC80Q76M96 950 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 ADCK1Q86TW2 530 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 ZNF575Q86XF7 245 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 KIRREL3Q8IZU9 778 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 C11orf65Q8NCR3 313 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 OR9I1Q8NGQ6 314 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 ARPC1AQ92747 370 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 ZNF714Q96N38 554 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 OR4C12Q96R67 309 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 GNB4Q9HAV0 340 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 ACTR3BQ9P1U1 418 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 PYCARDQ9ULZ3 195 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 CORO2BQ9UQ03 480 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 GMEB1Q9Y692 573 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 DSCAML1Q8TD84 2053 aa12.42□□□□□ -0.42
VPS53-218ENST00000575207 PRSS29PA6NIE9 313 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 EFCAB9A8MZ26 197 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 LEUTXA8MZ59 168 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 SPAG7O75391 227 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 TK1P04183 234 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 SLC2A1P11166 492 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 KIAA0141Q14154 515 aaPredicted RBP12.41□□□□□ -0.42
VPS53-218ENST00000575207 SLC36A3Q495N2 470 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 SLC26A7Q8TE54 656 aa12.41□□□□□ -0.42
VPS53-218ENST00000575207 TSEN15Q8WW01 171 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms