RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SOCS2O14508 198 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 TIMM23O14925 209 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 MLNRO43193 412 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 EIF4E2O60573 245 aaKnown RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 HSBP1O75506 76 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 OXSR1O95747 527 aaPredicted RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 NUDT14O95848 222 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 GUSBP08236 651 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 COX6B1P14854 86 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ME2P23368 584 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 GIFP27352 417 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 TIMP3P35625 211 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 DCTP40126 519 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 EIF1P41567 113 aaKnown RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 CDKN2CP42773 168 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 HSPA13P48723 471 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 GAS1P54826 345 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 AQP5P55064 265 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 NUP107P57740 925 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 OR2B6P58173 313 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 SLC25A35Q3KQZ1 300 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ARHGAP11BQ3KRB8 267 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 EIPR1Q53HC9 387 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 SLC35D3Q5M8T2 416 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ADAM5Q6NVV9 412 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 TMPRSS11AQ6ZMR5 421 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 MARCH3Q86UD3 253 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ZNF575Q86XF7 245 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 CLECL1Q8IZS7 167 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ZNF614Q8N883 585 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 OR2M3Q8NG83 312 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 OR5AK3PQ8NH89 298 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 RNF138Q8WVD3 245 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 NTNG2Q96CW9 530 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 NEURL3Q96EH8 262 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 SDF2Q99470 211 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ZNF251Q9BRH9 671 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 URM1Q9BTM9 101 aaKnown RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 UGT2B28Q9BY64 529 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 NMUR2Q9GZQ4 415 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 OR51I1Q9H343 314 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ARMC7Q9H6L4 198 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 SLCO1B3Q9NPD5 702 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 SDR39U1Q9NRG7 319 aaPredicted RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 PAQR5Q9NXK6 330 aaPredicted RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 CALML5Q9NZT1 146 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 SPRR3Q9UBC9 169 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 ZNF629Q9UEG4 869 aaPredicted RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 MRM2Q9UI43 246 aaKnown RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 KIF25Q9UIL4 384 aa5.15□□□□□ -1.59
VPS53-212ENST00000572259 UTP20O75691 2785 aaKnown RBP5.15□□□□□ -1.59
VPS53-212ENST00000572259 SPG11Q96JI7 2443 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ANKHD1Q8IWZ3 2542 aaKnown RBP5.14□□□□□ -1.59
VPS53-212ENST00000572259 UQCRHLA0A096LP55 91 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 GJE1A6NN92 205 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 CENPXA8MT69 81 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 EVPLLA8MZ36 301 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 SIRPB1O00241 398 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ZNF195O14628 629 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ZNHIT1O43257 154 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 XRCC2O43543 280 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 FCN3O75636 299 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 FARS2O95363 451 aaKnown RBP5.14□□□□□ -1.59
VPS53-212ENST00000572259 IGKV1D-16P01601 117 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 OR12D1P0DN82 309 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ZNF17P17021 662 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 PPIBP23284 216 aaKnown RBP5.14□□□□□ -1.59
VPS53-212ENST00000572259 FKBP2P26885 142 aaKnown RBP5.14□□□□□ -1.59
VPS53-212ENST00000572259 OPRM1P35372 400 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 UGT2B10P36537 528 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ATP4BP51164 291 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 P2RX1P51575 399 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 CEBPGP53567 150 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 HAGHQ16775 308 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 MS4A18Q3C1V0 323 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 SLC22A6Q4U2R8 563 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 PAN3Q58A45 887 aaKnown RBP5.14□□□□□ -1.59
VPS53-212ENST00000572259 CCNJQ5T5M9 372 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ASPHD1Q5U4P2 390 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 METTL21CQ5VZV1 264 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 SAXO2Q658L1 398 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 TNFAIP8L2Q6P589 184 aaPredicted RBP5.14□□□□□ -1.59
VPS53-212ENST00000572259 C19orf35Q6ZS72 473 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 RFPL4BQ6ZWI9 263 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 FAM122BQ7Z309 247 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 GALNT10Q86SR1 603 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ZNF546Q86UE3 836 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 SLC35F2Q8IXU6 374 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 LINC00518Q8N0U6 118 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 OR5D16Q8NGK9 328 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 OR4C3Q8NH37 302 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 OR52E5Q8NH55 327 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 TMEM234Q8WY98 164 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 PIGTQ969N2 578 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ROPN1LQ96C74 230 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 OR52B2Q96RD2 323 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 SLC6A7Q99884 636 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 POLDIP3Q9BY77 421 aaKnown RBP5.14□□□□□ -1.59
VPS53-212ENST00000572259 TIGARQ9NQ88 270 aa5.14□□□□□ -1.59
VPS53-212ENST00000572259 ABCD2Q9UBJ2 740 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms