RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TGIF2Q9GZN2 237 aa9.46□□□□□ -0.9
CCDC40-207ENST00000572253 EIF5A2Q9GZV4 153 aaKnown RBP9.46□□□□□ -0.9
CCDC40-207ENST00000572253 RRP8O43159 456 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 EFNA2O43921 213 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 ZFAND5O76080 213 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 TMEM225BP0DP42 221 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 NAT2P11245 290 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 FKBP2P26885 142 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 CLDN17P56750 224 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 LSM6P62312 80 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 SMAD4Q13485 552 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 EIF2S3LQ2VIR3 472 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 TMEM176BQ3YBM2 270 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 UBAC2Q8NBM4 344 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 SNIP1Q8TAD8 396 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF501Q96CX3 271 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 LIN37Q96GY3 246 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 PBDC1Q9BVG4 233 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 TUBD1Q9UJT1 453 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 HDGFL3Q9Y3E1 203 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 COL5A1P20908 1838 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 UNC13CQ8NB66 2214 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF850A8MQ14 1090 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 SGCEO43556 437 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 OR8U9P0C7N5 309 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF17P17021 662 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 EIF1P41567 113 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 RNF212Q495C1 297 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 OR8U1Q8NH10 309 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 PIGTQ969N2 578 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 CACFD1Q9UGQ2 172 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 PIGLQ9Y2B2 252 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 CRYM-AS1A6NIL9 109 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 EIF3GO75821 320 aaKnown RBP eCLIP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 OR5H8P0DN80 308 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 FAHP16930 419 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 GLP1RP43220 463 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 DMRTC1Q5HYR2 192 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 RABEPKQ7Z6M1 372 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 KDF1Q8NAX2 398 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 NFAM1Q8NET5 270 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 POC1BQ8TC44 478 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 HAS2Q92819 552 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 TCEAL3Q969E4 200 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 TOMM40LQ969M1 308 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 MRPL24Q96A35 216 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 CLCC1Q96S66 551 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 PNRC2Q9NPJ4 139 aaKnown RBP9.45□□□□□ -0.9
CCDC40-207ENST00000572253 NECAP2Q9NVZ3 263 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 TIMM10BQ9Y5J6 103 aa9.45□□□□□ -0.9
CCDC40-207ENST00000572253 A0A0U1RQV5 110 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF728P0DKX0 622 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 FOXL2P58012 376 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 GUK1Q16774 197 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 MIDNQ504T8 468 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 KRBOX4Q5JUW0 171 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 RHBDD2Q6NTF9 364 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 C6orf201Q7Z4U5 140 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 C1QL2Q7Z5L3 287 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 SLC39A7Q92504 469 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 C10orf35Q96D05 121 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 CHST5Q9GZS9 411 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 METTL9Q9H1A3 318 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 STRAPQ9Y3F4 350 aaKnown RBP9.44□□□□□ -0.9
CCDC40-207ENST00000572253 PCDH15Q96QU1 1955 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 PMS2P1A4D2B8 440 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 PIAS2O75928 621 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 SEC11BP0C7V7 166 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 RAB5CP51148 216 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 ZNF84P51523 738 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 NXPH1P58417 271 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 HABP2Q14520 560 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-207ENST00000572253 RSU1Q15404 277 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 NKAIN1Q4KMZ8 207 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 PLXDC2Q6UX71 529 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 SSC4DQ8WTU2 575 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 SPTSSAQ969W0 71 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 HIST1H2BAQ96A08 127 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 SHDQ96IW2 340 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 PARP12Q9H0J9 701 aaKnown RBP9.44□□□□□ -0.9
CCDC40-207ENST00000572253 ANXA10Q9UJ72 324 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 A0A0C4DFX4 3053 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-207ENST00000572253 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-207ENST00000572253 AQP7P3A6NL99 342 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 NME2P1O60361 137 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 GPR137BO60478 399 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 GLB1P16278 677 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 CTSSP25774 331 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 PIGPP57054 158 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 CHAF1BQ13112 559 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 GPR157Q5UAW9 335 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 SPACA1Q9HBV2 294 aa9.44□□□□□ -0.9
CCDC40-207ENST00000572253 IGLV3-32A0A0A0MS00 114 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 AKR1C3P42330 323 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 ID4P47928 161 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 AWAT1Q58HT5 328 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 SLC16A14Q7RTX9 510 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 OR2M3Q8NG83 312 aa9.43□□□□□ -0.9
CCDC40-207ENST00000572253 OR10G3Q8NGC4 313 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms