RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KCNJ15Q99712 375 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 TMEM109Q9BVC6 243 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 SP140LQ9H930 580 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 MRPL22Q9NWU5 206 aaKnown RBP14.22□□□□□ -0.13
CLK3-227ENST00000570296 RHCGQ9UBD6 479 aa14.22□□□□□ -0.13
CLK3-227ENST00000570296 SIRT4Q9Y6E7 314 aaPredicted RBP14.22□□□□□ -0.13
CLK3-227ENST00000570296 TBX1O43435 398 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 RENP00797 406 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 ZNF728P0DKX0 622 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 ZNF823P16415 610 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 GSK3AP49840 483 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 SLC35B1P78383 322 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 FAM27D1Q5T7N8 215 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 TBPL2Q6SJ96 375 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 KCTD8Q6ZWB6 473 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 CD177Q8N6Q3 437 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 IL17DQ8TAD2 202 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 SGK3Q96BR1 496 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 CDRT15Q96T59 188 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 RASL12Q9NYN1 266 aa14.21□□□□□ -0.13
CLK3-227ENST00000570296 SASH3O75995 380 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 ARHGDIBP52566 201 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 PRDX4Q13162 271 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 KIR2DS1Q14954 304 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 TAF13Q15543 124 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 KRT71Q3SY84 523 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 KLHL12Q53G59 568 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 SATL1Q86VE3 508 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 RNF170Q96K19 258 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 NMNAT3Q96T66 252 aa14.2□□□□□ -0.14
CLK3-227ENST00000570296 NSRP1Q9H0G5 558 aaKnown RBP14.2□□□□□ -0.14
CLK3-227ENST00000570296 RPRD1BQ9NQG5 326 aaKnown RBP14.2□□□□□ -0.14
CLK3-227ENST00000570296 RFPL4AA6NLU0 287 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 RFPL4AL1F8VTS6 287 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 SLC22A2O15244 555 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 RGS16O15492 202 aaPredicted RBP14.19□□□□□ -0.14
CLK3-227ENST00000570296 PIPP12273 146 aaPredicted RBP14.19□□□□□ -0.14
CLK3-227ENST00000570296 HTR1DP28221 377 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 YAP1P46937 504 aaKnown RBP14.19□□□□□ -0.14
CLK3-227ENST00000570296 FXYD6P3P58550 94 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 ACTA2P62736 377 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 ACTG2P63267 376 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 ACTC1P68032 377 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 ACTA1P68133 377 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 DEFB136Q30KP8 78 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 CYBRD1Q53TN4 286 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 RRM2BQ7LG56 351 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 RNFT2Q96EX2 444 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 FAM46AQ96IP4 442 aaKnown RBP14.19□□□□□ -0.14
CLK3-227ENST00000570296 NOL4LQ96MY1 436 aaPredicted RBP14.19□□□□□ -0.14
CLK3-227ENST00000570296 FGF23Q9GZV9 251 aaPredicted RBP14.19□□□□□ -0.14
CLK3-227ENST00000570296 DCLRE1BQ9H816 532 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 KMT2AQ03164 3969 aa14.19□□□□□ -0.14
CLK3-227ENST00000570296 IGHV2-26A0A0B4J1V2 119 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 ZNF850A8MQ14 1090 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 FFAR1O14842 300 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 DNAJC8O75937 253 aaPredicted RBP14.18□□□□□ -0.14
CLK3-227ENST00000570296 CST4P01036 141 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 SNAPC1Q16533 368 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 SMIM21Q3B7S5 101 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 ACP7Q6ZNF0 438 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 ZBTB49Q6ZSB9 765 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 LCNL1Q6ZST4 164 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 HDXQ7Z353 690 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 ZNF671Q8TAW3 534 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 HPSE2Q8WWQ2 592 aa14.18□□□□□ -0.14
CLK3-227ENST00000570296 RSRC1Q96IZ7 334 aaKnown RBP14.18□□□□□ -0.14
CLK3-227ENST00000570296 ERMAPQ96PL5 475 aaPredicted RBP14.18□□□□□ -0.14
CLK3-227ENST00000570296 ABCA13Q86UQ4 5058 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 J3KTA2 159 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 TK1P04183 234 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 ANXA2P07355 339 aaKnown RBP14.17□□□□□ -0.14
CLK3-227ENST00000570296 H2AFXP16104 143 aaPredicted RBP14.17□□□□□ -0.14
CLK3-227ENST00000570296 PRDX2P32119 198 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 RPS27P42677 84 aaKnown RBP14.17□□□□□ -0.14
CLK3-227ENST00000570296 KRT72Q14CN4 511 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 DCXRQ7Z4W1 244 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 OR4P4Q8NGL7 312 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 TPD52L3Q96J77 140 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 CLEC7AQ9BXN2 247 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 PAPOLBQ9NRJ5 636 aaKnown RBP14.17□□□□□ -0.14
CLK3-227ENST00000570296 HHLA2Q9UM44 414 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 MOB4Q9Y3A3 225 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 HSPE1-MOB4S4R3N1 261 aa14.17□□□□□ -0.14
CLK3-227ENST00000570296 SERPINE3A8MV23 424 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 ANGPT2O15123 496 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 ARPC3O15145 178 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 GPM6AP51674 278 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 FHL3Q13643 280 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 C16orf89Q6UX73 402 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 OR4K13Q8NH42 304 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 LINC00476Q8WZB0 136 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 SLAMF6Q96DU3 332 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 OR51I2Q9H344 312 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 RGCCQ9H4X1 137 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 ANKRD19PQ9H560 264 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 CENPMQ9NSP4 180 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 DPM3Q9P2X0 92 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 SNX13Q9Y5W8 968 aa14.16□□□□□ -0.14
CLK3-227ENST00000570296 SESN1Q9Y6P5 492 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms