RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FAM90A24PP0C7X0 464 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 TMEM225BP0DP42 221 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 PMELP40967 661 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 SELENOVP59797 346 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 RPS23P62266 143 aaKnown RBP6.88□□□□□ -1.31
VPS39-213ENST00000570062 BTG1P62324 171 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 GK2Q14410 553 aaPredicted RBP6.88□□□□□ -1.31
VPS39-213ENST00000570062 RSU1Q15404 277 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 UBE2V2Q15819 145 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 ZNF718Q3SXZ3 478 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 PLCXD3Q63HM9 321 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 MTFR2Q6P444 385 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 VWA1Q6PCB0 445 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 CCBE1Q6UXH8 406 aaPredicted RBP6.88□□□□□ -1.31
VPS39-213ENST00000570062 SEM1Q6ZVN7 128 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 MOB3CQ70IA8 216 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 TMEM200AQ86VY9 491 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 CXorf67Q86X51 503 aaPredicted RBP6.88□□□□□ -1.31
VPS39-213ENST00000570062 SNX29P2Q8IUI4 249 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 ZNF584Q8IVC4 421 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 FAM89BQ8N5H3 189 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 WDR31Q8NA23 367 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 ST6GALNAC3Q8NDV1 305 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 OR4D6Q8NGJ1 314 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 OR10R2Q8NGX6 335 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 TNFAIP8L1Q8WVP5 186 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 PIGCQ92535 297 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 YIPF5Q969M3 257 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 CREB3L1Q96BA8 519 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 TM2D1Q9BX74 207 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 TMEM59Q9BXS4 323 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 PRORYQ9H606 182 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 AUNIPQ9H7T9 357 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS39-213ENST00000570062 MTFP1Q9UDX5 166 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 STARD10Q9Y365 291 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 LAMA5O15230 3695 aa6.88□□□□□ -1.31
VPS39-213ENST00000570062 HECTD1Q9ULT8 2610 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 MED13Q9UHV7 2174 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 A0A0B4J203 849 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 IGKV1-9A0A0C4DH69 117 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 ANKRD20A5PA0PJZ0 165 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 TMEM210A6NLX4 147 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 C16orf97H3BN30 126 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 LMX1BO60663 402 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 CDC14BO60729 498 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 CRTAPO75718 401 aaPredicted RBP6.87□□□□□ -1.31
VPS39-213ENST00000570062 TOXO94900 526 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 CRYAAP02489 173 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 TRAPPC2P0DI81 140 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 TRAPPC2BP0DI82 140 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 SLC6A1P30531 599 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 GCH1P30793 250 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 GDNFP39905 211 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 IDH3GP51553 393 aaPredicted RBP6.87□□□□□ -1.31
VPS39-213ENST00000570062 BCAP31P51572 246 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 FOXG1P55316 489 aaPredicted RBP6.87□□□□□ -1.31
VPS39-213ENST00000570062 RAB25P57735 213 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 TAS2R19P59542 299 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 PPP1CBP62140 327 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 RPS27AP62979 156 aaKnown RBP6.87□□□□□ -1.31
VPS39-213ENST00000570062 GNG3P63215 75 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 QRFPP83859 136 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 FOXF2Q12947 444 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 MEF2DQ14814 521 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 ZMYND11Q15326 602 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 ACTBL2Q562R1 376 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 PLXDC2Q6UX71 529 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 SEZ6L2Q6UXD5 910 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 LINC00596Q86U02 117 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 Q8IYB0 196 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 TMEM229BQ8NBD8 167 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 OR51T1Q8NGJ9 327 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 OR2AE1Q8NHA4 323 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 TRIM63Q969Q1 353 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 RAB3CQ96E17 227 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 GAL3ST1Q99999 423 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 RTL8AQ9BWD3 113 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 PKIBQ9C010 78 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 C11orf54Q9H0W9 315 aaPredicted RBP6.87□□□□□ -1.31
VPS39-213ENST00000570062 OPN3Q9H1Y3 402 aaPredicted RBP6.87□□□□□ -1.31
VPS39-213ENST00000570062 SPACA1Q9HBV2 294 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 ASF1BQ9NVP2 202 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 GPR160Q9UJ42 338 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 TBC1D24Q9ULP9 559 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 HSF4Q9ULV5 492 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 EDARQ9UNE0 448 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 POLDIP2Q9Y2S7 368 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 RHBDD3Q9Y3P4 386 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 NUBP2Q9Y5Y2 271 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 SLC25A15Q9Y619 301 aa6.87□□□□□ -1.31
VPS39-213ENST00000570062 AKAP13Q12802 2813 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 FAM230AA0A1W2PPH8 454 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 A6NIN4 97 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 IQCF6A8MYZ5 107 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 RAB27BO00194 218 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PLA2G10O15496 165 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 PRAF2O60831 178 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 SMPD2O60906 423 aa6.86□□□□□ -1.31
VPS39-213ENST00000570062 MPIG6BO95866 241 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms