RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZNF12P17014 697 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 AMY2BP19961 511 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 AZGP1P25311 298 aaKnown RBP7.81□□□□□ -1.16
VPS35-211ENST00000569950 CFHR2P36980 270 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 ERVK11-1P61568 191 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 ZNF181Q2M3W8 571 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 FAM201AQ5SY85 155 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 PLCXD3Q63HM9 321 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 SLC16A12Q6ZSM3 486 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 MOGAT3Q86VF5 341 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 MS4A15Q8N5U1 240 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 SPERTQ8NA61 448 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 SCCPDHQ8NBX0 429 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 DNAAF1Q8NEP3 725 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 OR52N4Q8NGI2 321 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 NPRL2Q8WTW4 380 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 TSEN15Q8WW01 171 aaKnown RBP7.81□□□□□ -1.16
VPS35-211ENST00000569950 AQP3Q92482 292 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 SEH1LQ96EE3 360 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 RNF170Q96K19 258 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 SPACA5Q96QH8 159 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 OR51E2Q9H255 320 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 ZCCHC4Q9H5U6 513 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 RNF167Q9H6Y7 350 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 METTL17Q9H7H0 456 aaPredicted RBP7.81□□□□□ -1.16
VPS35-211ENST00000569950 UFSP2Q9NUQ7 469 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 TREM2Q9NZC2 230 aa7.81□□□□□ -1.16
VPS35-211ENST00000569950 ANK3Q12955 4377 aaKnown RBP7.81□□□□□ -1.16
VPS35-211ENST00000569950 SONP18583 2426 aaKnown RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 WNK2Q9Y3S1 2297 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 A0A0G2JK05 382 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 LRP5LA4QPB2 252 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 TMEM210A6NLX4 147 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 TMEM178BH3BS89 294 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 CDIPTO14735 213 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 SULT1B1O43704 296 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 RGS9O75916 674 aaPredicted RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 IGHV2-70P01814 119 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 ALDOBP05062 364 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 RPSAP08865 295 aaKnown RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 BMP4P12644 408 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 GADD45AP24522 165 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 FGF9P31371 208 aaPredicted RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 TGFBR1P36897 503 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 GNALP38405 381 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 SRP9P49458 86 aaKnown RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 GNG3P63215 75 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 ZMYND11Q15326 602 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 Q5PR19 223 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 FAM166AQ6J272 317 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 PRSS57Q6UWY2 283 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 ASCL4Q6XD76 172 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 C1QL2Q7Z5L3 287 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 CEACAM19Q7Z692 300 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 ANGPTL5Q86XS5 388 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 SERPINA12Q8IW75 414 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 FTMTQ8N4E7 242 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 TRMT10AQ8TBZ6 339 aaKnown RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 RDH5Q92781 318 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 RTL8AQ9BWD3 113 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 MRPS26Q9BYN8 205 aaKnown RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 NAA50Q9GZZ1 169 aaKnown RBP7.8□□□□□ -1.16
VPS35-211ENST00000569950 WDR13Q9H1Z4 485 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 PLEKHA1Q9HB21 404 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 ABCB9Q9NP78 766 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 TMEM106BQ9NUM4 274 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 MTCH1Q9NZJ7 389 aa7.8□□□□□ -1.16
VPS35-211ENST00000569950 SVEP1Q4LDE5 3571 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 TRIM64BA6NI03 449 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 ANXA2P2A6NMY6 339 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 SRRM5B3KS81 715 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 J3QT63 122 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 NOS1APO75052 506 aaPredicted RBP7.79□□□□□ -1.16
VPS35-211ENST00000569950 GATBO75879 557 aaKnown RBP7.79□□□□□ -1.16
VPS35-211ENST00000569950 CYB5R3P00387 301 aaPredicted RBP7.79□□□□□ -1.16
VPS35-211ENST00000569950 GRPP07492 148 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 ACAA1P09110 424 aaPredicted RBP7.79□□□□□ -1.16
VPS35-211ENST00000569950 PGA5P0DJD9 388 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 CD36P16671 472 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 ZNF20P17024 532 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 TNFRSF1AP19438 455 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 GALP22466 123 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 PSMA1P25786 263 aaKnown RBP7.79□□□□□ -1.16
VPS35-211ENST00000569950 FUT6P51993 359 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 ART1P52961 327 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 KISS1Q15726 138 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 OR5D14Q8NGL3 314 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 OR8S1Q8NH09 359 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 PHYHIPQ92561 330 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 ERGIC1Q969X5 290 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 SPSB1Q96BD6 273 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 CYYR1Q96J86 154 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 ZNF488Q96MN9 340 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 TECTBQ96PL2 329 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 MICU1Q9BPX6 476 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 NRIP2Q9BQI9 281 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 CENPOQ9BU64 300 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 PKIBQ9C010 78 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 CHODLQ9H9P2 273 aa7.79□□□□□ -1.16
VPS35-211ENST00000569950 BARX1Q9HBU1 254 aaPredicted RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms