RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 FABP1P07148 127 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 ANOS1P23352 680 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 PTGER4P35408 488 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 FASLGP48023 281 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 GUK1Q16774 197 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 THEM4Q5T1C6 240 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 PLXDC2Q6UX71 529 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 OR5AS1Q8N127 324 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 PTX4Q96A99 478 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 ZNF285Q96NJ3 590 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 MAGT1Q9H0U3 335 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 ZNF442Q9H7R0 627 aa12.77□□□□□ -0.37
VPS35-210ENST00000568784 ZNF107Q9UII5 783 aaPredicted RBP12.77□□□□□ -0.37
VPS35-210ENST00000568784 C7orf77A4D0Y5 90 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 LIPT2A6NK58 231 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 H3BMH7 237 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 NME1P15531 152 aaKnown RBP12.76□□□□□ -0.37
VPS35-210ENST00000568784 SUPT4H1P63272 117 aaKnown RBP12.76□□□□□ -0.37
VPS35-210ENST00000568784 DOK3Q7L591 496 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 LILRB1Q8NHL6 650 aaPredicted RBP12.76□□□□□ -0.37
VPS35-210ENST00000568784 RTBDNQ9BSG5 229 aaPredicted RBP12.76□□□□□ -0.37
VPS35-210ENST00000568784 LMAN1LQ9HAT1 526 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 ALKBH4Q9NXW9 302 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 DIDO1Q9BTC0 2240 aaKnown RBP12.76□□□□□ -0.37
VPS35-210ENST00000568784 LINC00587B1AMM8 73 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 PHF1O43189 567 aaPredicted RBP12.76□□□□□ -0.37
VPS35-210ENST00000568784 PATE4P0C8F1 98 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 HERV-K104P61576 105 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 NOXO1Q8NFA2 376 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 ST8SIA1Q92185 356 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 ERGIC1Q969X5 290 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 LUZP4Q9P127 313 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 REV3LO60673 3130 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 ANKUB1A6NFN9 424 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 FTCDNL1E5RQL4 147 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 WRBO00258 174 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 GPR37O15354 613 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 JTBO76095 146 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 CST4P01036 141 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 ZNF728P0DKX0 622 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 CD79AP11912 226 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 ZNF528Q3MIS6 628 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 ADAMTS17Q8TE56 1095 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 SLC5A7Q9GZV3 580 aa12.76□□□□□ -0.37
VPS35-210ENST00000568784 CD37P11049 281 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 FAM189A2Q15884 450 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 RTN4IP1Q8WWV3 396 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 GPHA2Q96T91 129 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 CDCA3Q99618 268 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 PECRQ9BY49 303 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 IGKV1D-8A0A087WSZ0 117 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 A0A1W2PQD3 144 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 DHRS7CA6NNS2 312 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 ACAA1P09110 424 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 OR5AC1P0C628 307 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 FAM157CP0CG43 387 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 HKR1P10072 659 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 NAAAQ02083 359 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 PPA1Q15181 289 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 HAGHQ16775 308 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 OR6C1Q96RD1 312 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 C8orf33Q9H7E9 229 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 KPTNQ9Y664 436 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 RP1L1Q8IWN7 2480 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 ZNF708P17019 499 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 DVL1P1P54792 670 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 GNMTQ14749 295 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 C5orf46Q6UWT4 87 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 LYZL2Q7Z4W2 148 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 MRPL38Q96DV4 380 aaKnown RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 BSCL2Q96G97 398 aaPredicted RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 SRPK3Q9UPE1 567 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 CARHSP1Q9Y2V2 147 aaKnown RBP12.75□□□□□ -0.37
VPS35-210ENST00000568784 CACNA1DQ01668 2161 aa12.75□□□□□ -0.37
VPS35-210ENST00000568784 LILRA5A6NI73 299 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 MST1LQ2TV78 715 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 SOHLH1Q5JUK2 328 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 RPUSD3Q6P087 351 aaKnown RBP12.74□□□□□ -0.37
VPS35-210ENST00000568784 DENND4AQ7Z401 1863 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 TRANK1O15050 2925 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 ZNF814B7Z6K7 855 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 F8VVB4 439 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 F8VWA3 439 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 OR7C1O76099 320 aaPredicted RBP12.74□□□□□ -0.37
VPS35-210ENST00000568784 HLA-GP17693 338 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 VAMP2P63027 116 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 NKAIN1Q4KMZ8 207 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 ZFP62Q8NB50 900 aaPredicted RBP12.74□□□□□ -0.37
VPS35-210ENST00000568784 SUMF2Q8NBJ7 301 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 AKR7LQ8NHP1 331 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 CLEC1BQ9P126 229 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 GHRLQ9UBU3 117 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 NCOA6Q14686 2063 aaPredicted RBP12.74□□□□□ -0.37
VPS35-210ENST00000568784 LOC390937A0A1W2PQ73 354 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 CDRT15L2A8MXV6 281 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 GLP1RP43220 463 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 CCR5P51681 352 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 NHLH2Q02577 135 aa12.74□□□□□ -0.37
VPS35-210ENST00000568784 ZNF674Q2M3X9 581 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms