RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 RHOAP61586 193 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 LMO4P61968 165 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 RPS27AP62979 156 aaKnown RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 SP4Q02446 784 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TLE4Q04727 773 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 CD164Q04900 197 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 CKAP4Q07065 602 aaKnown RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 APOFQ13790 326 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 OR1Q1Q15612 314 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZCWPW2Q504Y3 356 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 DCST2Q5T1A1 773 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 CPTPQ5TA50 214 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 HACD4Q5VWC8 232 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 METTL21CQ5VZV1 264 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 OR52E8Q6IFG1 317 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TYW3Q6IPR3 259 aaKnown RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 SPSB3Q6PJ21 355 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 IGFL2Q6UWQ7 119 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 WDR82Q6UXN9 313 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SH2D5Q6ZV89 423 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SSX7Q7RTT5 188 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 LHFPL3Q86UP9 236 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZNF547Q8IVP9 402 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 DEFB119Q8N690 84 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ATP6V0D2Q8N8Y2 350 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ZNF383Q8NA42 475 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 OR2D3Q8NGH3 330 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 OR11L1Q8NGX0 322 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 OR10X1Q8NGY0 326 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 PIGXQ8TBF5 258 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 SLC7A13Q8TCU3 470 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 MCOLN3Q8TDD5 553 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 NELFBQ8WX92 580 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 ADGRG7Q96K78 797 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 C18orf12Q96KH6 178 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 CEP170P1Q96L14 293 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 NOL4LQ96MY1 436 aaPredicted RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 STACQ99469 402 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 OR51B5Q9H339 312 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 UGT1A8Q9HAW9 530 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TMEM27Q9HBJ8 222 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 VCX3AQ9NNX9 186 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 AMBNQ9NP70 447 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 CTPS2Q9NRF8 586 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 DDIT4Q9NX09 232 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TMEM9Q9P0T7 183 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TP53TG1Q9Y2A0 90 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 NDUFAF1Q9Y375 327 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 MRPS18CQ9Y3D5 142 aaKnown RBP2.41□□□□□ -2.02
VPS35-209ENST00000568642 OR51B4Q9Y5P0 310 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 NUMA1Q14980 2115 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 STK36Q9NRP7 1315 aa2.41□□□□□ -2.02
VPS35-209ENST00000568642 TMEM272A0A1B0GTI8 110 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 A0A1B0GWB2 263 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MYBPHLA2RUH7 354 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 IGLON5A6NGN9 336 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SMIM23A6NLE4 172 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 EFCAB7A8K855 629 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ANKRD63C9JTQ0 380 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SMKR1H3BMG3 65 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 KCNK1O00180 336 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 INPP4BO15327 924 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 PHF1O43189 567 aaPredicted RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 FOXH1O75593 365 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 GLSO94925 669 aaPredicted RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 VENTXO95231 258 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CTDNEP1O95476 244 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SEC24AO95486 1093 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 PAK4O96013 591 aaPredicted RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 LGALS2P05162 132 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CCDC166P0CW27 439 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CT45A6P0DMU7 189 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CT45A5P0DMU8 189 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CT45A7P0DMV0 189 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SNHG28P0DPA3 235 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 NQO1P15559 274 aaKnown RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 CD36P16671 472 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ADORA1P30542 326 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CD79BP40259 229 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 GALR1P47211 349 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 GABRA4P48169 554 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 IDH3GP51553 393 aaPredicted RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 PSMD7P51665 324 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MNAT1P51948 309 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 RND3P61587 244 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SEC61A1P61619 476 aaKnown RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 TUBA4AP68366 448 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MRPS25P82663 173 aaKnown RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 HMGCS1Q01581 520 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 TGFBR3Q03167 851 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 Q0VFX4 171 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 FOXF2Q12947 444 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 TEAD2Q15562 447 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 PSMD5Q16401 504 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CYP51A1Q16850 503 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 TRIM16LQ309B1 348 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 TFDP3Q5H9I0 405 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CT45A1Q5HYN5 189 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MS4A13Q5J8X5 152 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 FAM45BPQ6NSW5 357 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms