RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 VNN3Q9NY84 501 aa9.31□□□□□ -0.92
CLK3-222ENST00000568232 hCG_38984A0A1B0GV85 526 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 PSMB11A5LHX3 300 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 OR6C68A6NDL8 312 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 TVP23AA6NH52 213 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 ZNF850A8MQ14 1090 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 C17orf98A8MV24 154 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 ANGPT2O15123 496 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 NOS3P29474 1203 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 DCTDP32321 178 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 ZSCAN26Q16670 478 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 TIGD6Q17RP2 521 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 GFOD2Q3B7J2 385 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 ZNF770Q6IQ21 691 aaPredicted RBP9.3□□□□□ -0.92
CLK3-222ENST00000568232 NANOGP8Q6NSW7 305 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 DCXRQ7Z4W1 244 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 THAP5Q7Z6K1 395 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 VTCN1Q7Z7D3 282 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 ZBTB46Q86UZ6 589 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 ZDHHC21Q8IVQ6 265 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 CD177Q8N6Q3 437 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 OR11H6Q8NGC7 330 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 OR5P3Q8WZ94 311 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 RAX2Q96IS3 184 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 RSRC1Q96IZ7 334 aaKnown RBP9.3□□□□□ -0.92
CLK3-222ENST00000568232 SLC25A33Q9BSK2 321 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 CENPMQ9NSP4 180 aa9.3□□□□□ -0.92
CLK3-222ENST00000568232 ZNF256Q9Y2P7 627 aaPredicted RBP9.3□□□□□ -0.92
CLK3-222ENST00000568232 RFPL4AA6NLU0 287 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 ANXA2P2A6NMY6 339 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 RFPL4AL1F8VTS6 287 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 LY86O95711 162 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 RENP00797 406 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 IFNA14P01570 189 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 HIST1H1CP16403 213 aaKnown RBP9.29□□□□□ -0.92
CLK3-222ENST00000568232 ZNF823P16415 610 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 PYCR1P32322 319 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 KDELR2P33947 212 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 SELENOWP63302 87 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 PRDX4Q13162 271 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 TAF13Q15543 124 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 FAM76BQ5HYJ3 339 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 C9orf66Q5T8R8 295 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 RRM2BQ7LG56 351 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 NDNFQ8TB73 568 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 ZNRF4Q8WWF5 429 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 HPSE2Q8WWQ2 592 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 RNF170Q96K19 258 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 KCNJ15Q99712 375 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 CCDC28BQ9BUN5 200 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 ZMAT4Q9H898 229 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 LIN7BQ9HAP6 207 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 EDA2RQ9HAV5 297 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 ZNF319Q9P2F9 582 aa9.29□□□□□ -0.92
CLK3-222ENST00000568232 TMEM210A6NLX4 147 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 SEC14L6B5MCN3 397 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 H3BUI4 141 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 CCL24O00175 119 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 JTBO76095 146 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 ANXA2P07355 339 aaKnown RBP9.28□□□□□ -0.92
CLK3-222ENST00000568232 FRMD6-AS1P0C7T7 363 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 PGA5P0DJD9 388 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 OMPP47874 163 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 GNGT1P63211 74 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 SEC23BQ15437 767 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 DEFB136Q30KP8 78 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 LCN8Q6JVE9 175 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 C16orf82Q7Z2V1 217 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 CAPSLQ8WWF8 208 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 PIGCQ92535 297 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 SLAMF6Q96DU3 332 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 AKR1E2Q96JD6 320 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 NOL4LQ96MY1 436 aaPredicted RBP9.28□□□□□ -0.92
CLK3-222ENST00000568232 TMEM120AQ9BXJ8 343 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 C1orf21Q9H246 121 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 LINC00527Q9UJ94 153 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 TMEM5Q9Y2B1 443 aa9.28□□□□□ -0.92
CLK3-222ENST00000568232 ALMS1Q8TCU4 4167 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 UNC119BA6NIH7 251 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 EBAG9O00559 213 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 SLC22A2O15244 555 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 MTRF1O75570 445 aaKnown RBP9.27□□□□□ -0.93
CLK3-222ENST00000568232 IGHV1-8P0DP01 117 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 ACKR3P25106 362 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 PRDX2P32119 198 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 OR3A4PP47883 348 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 CX3CR1P49238 355 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 GPM6AP51674 278 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 GYS2P54840 703 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 GP2P55259 537 aaKnown RBP9.27□□□□□ -0.93
CLK3-222ENST00000568232 SMARCD3Q6STE5 483 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 FAM57BQ71RH2 274 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 CALHM1Q8IU99 346 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 EGFL6Q8IUX8 553 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 ZNF695Q8IW36 515 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 OR51L1Q8NGJ5 315 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 OR4C15Q8NGM1 316 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 STMN2Q93045 179 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 ISOC1Q96CN7 298 aa9.27□□□□□ -0.93
CLK3-222ENST00000568232 ZNF488Q96MN9 340 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms