RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 HSP90AA4PQ58FG1 418 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 C6orf183Q5T699 404 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 KDM4DQ6B0I6 523 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 CLEC6AQ6EIG7 209 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 TWF2Q6IBS0 349 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 C22orf42Q6IC83 251 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 FAM131AQ6UXB0 335 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 NDUFAF7Q7L592 441 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 COPS6Q7L5N1 327 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 DAZ4Q86SG3 579 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 ST13P4Q8IZP2 240 aaPredicted RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 DNAAF3Q8N9W5 541 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 PROKR2Q8NFJ6 384 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR2Z1Q8NG97 314 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR5T3Q8NGG3 340 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR51L1Q8NGJ5 315 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR4A15Q8NGL6 344 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR5K2Q8NHB8 316 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 ANGPTL6Q8NI99 470 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 CERS2Q96G23 380 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR4K3Q96R72 315 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 ACBD6Q9BR61 282 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 PRRG3Q9BZD7 231 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR2AG1Q9H205 316 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 OR52A5Q9H2C5 316 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 CCNB1IP1Q9NPC3 277 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 RRAGDQ9NQL2 400 aaPredicted RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 DAZ1Q9NQZ3 744 aaKnown RBP0.96□□□□□ -2.26
VPS35-207ENST00000568191 ZNF302Q9NR11 478 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 CA10Q9NS85 328 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 ASF1BQ9NVP2 202 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 SLC39A1Q9NY26 324 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 IL20Q9NYY1 176 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 FLVCR2Q9UPI3 526 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 LRRC42Q9Y546 428 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 ATP6V1DQ9Y5K8 247 aa0.96□□□□□ -2.26
VPS35-207ENST00000568191 KCNE1BA0A087WTH5 132 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 TRBV9A0A0B4J1U6 114 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CCL15-CCL14A0A0B4J2E2 113 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 GOLGA8QA0A0J9YX86 632 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 RAB19A4D1S5 217 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SDHAF1A6NFY7 115 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 TRPC5OSA6NMA1 111 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 ZNF99A8MXY4 864 aaPredicted RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 D6RAR5 112 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SIRPB1O00241 398 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 NDUFS6O75380 124 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 CRTAPO75718 401 aaPredicted RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 SCELO95171 688 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SMC2O95347 1197 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 MT-ND4P03905 459 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 IGKV1-16P04430 117 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 UBCP0CG48 685 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 MYL2P10916 166 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CCL2P13500 99 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 NQO2P16083 231 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CTRB1P17538 263 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 EIF2S2P20042 333 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 CCNOP22674 350 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 HMOX2P30519 316 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 S100A5P33763 92 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SLC1A2P43004 574 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CRATP43155 626 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 HAAOP46952 286 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 KCNJ3P48549 501 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 BLVRAP53004 296 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CLDN18P56856 261 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 RAD51Q06609 339 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 STX3Q13277 289 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 ART3Q13508 389 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 ANGPT1Q15389 498 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 VAMP3Q15836 100 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CCL15Q16663 113 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 C18orf21Q32NC0 220 aaPredicted RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 HSDL1Q3SXM5 330 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 TPTE2P1Q5T6R2 138 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CPTPQ5TA50 214 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 ZNF470Q6ECI4 717 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 PTRHD1Q6GMV3 140 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 OPN5Q6U736 354 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 TMPPEQ6ZT21 453 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 TRMT10CQ7L0Y3 403 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 TCF24Q7RTU0 167 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 MRPL21Q7Z2W9 205 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 RBM45Q8IUH3 476 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 LRRC8AQ8IWT6 810 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 NELFCDQ8IXH7 590 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SELENOHQ8IZQ5 122 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 CMTM8Q8IZV2 173 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SLC7A5P1Q8MH63 180 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 KRT222Q8N1A0 295 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 DRAM1Q8N682 238 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 ZNF565Q8N9K5 539 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 FBXO36Q8NEA4 188 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 OR9G4Q8NGQ1 327 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 OR13C9Q8NGT0 318 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 OR10G6Q8NH81 332 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 RXFP4Q8TDU9 374 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 CACNG8Q8WXS5 425 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 ANKRD7Q92527 254 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms