RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FAM230AA0A1W2PPH8 454 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 OR5B21A6NL26 309 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 PPIAL4DF5H284 164 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 SYNGR1O43759 233 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 PPIAL4FP0DN26 164 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 IRF2P14316 349 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 ZNF12P17014 697 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 ZNF20P17024 532 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 SEC61A1P61619 476 aaKnown RBP16.37■□□□□ 0.21
CLN3-225ENST00000566824 HAGHLQ6PII5 290 aaPredicted RBP16.37■□□□□ 0.21
CLN3-225ENST00000566824 ANGPTL5Q86XS5 388 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 CALHM1Q8IU99 346 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 HAVCR2Q8TDQ0 301 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 AQP3Q92482 292 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 HPS1Q92902 700 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 ORAI1Q96D31 301 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 ZNF488Q96MN9 340 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 MND1Q9BWT6 205 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 CCDC90BQ9GZT6 254 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 WDR13Q9H1Z4 485 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 Q9H521 79 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 PPIAL4AQ9Y536 164 aa16.37■□□□□ 0.21
CLN3-225ENST00000566824 SETD2Q9BYW2 2564 aaPredicted RBP16.37■□□□□ 0.21
CLN3-225ENST00000566824 AKR7A2O43488 359 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 TFF1P04155 84 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 MDH2P40926 338 aaKnown RBP16.36■□□□□ 0.21
CLN3-225ENST00000566824 ZNF404Q494X3 552 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 PRSS48Q7RTY5 328 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 C1orf87Q8N0U7 546 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 BATF2Q8N1L9 274 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 OR13C9Q8NGT0 318 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 TSEN15Q8WW01 171 aaKnown RBP16.36■□□□□ 0.21
CLN3-225ENST00000566824 PP6455Q8WZ26 134 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 LPAR2Q9HBW0 351 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 ZNF281Q9Y2X9 895 aa16.36■□□□□ 0.21
CLN3-225ENST00000566824 CEACAM18A8MTB9 384 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 LGALS8O00214 317 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 TNFRSF13BO14836 293 aaPredicted RBP16.35■□□□□ 0.21
CLN3-225ENST00000566824 CD5LO43866 347 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 HEXAP06865 529 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 ATF1P18846 271 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 CELP19835 753 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 CFHR2P36980 270 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 HAAOP46952 286 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 SPHARQ15513 63 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 TMEM155Q4W5P6 130 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 CYB5R2Q6BCY4 276 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 CRIP3Q6Q6R5 217 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 UTS2BQ765I0 119 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 FAM90A1Q86YD7 464 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 C10orf35Q96D05 121 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 RASSF4Q9H2L5 321 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 DHDHQ9UQ10 334 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 DOCK11Q5JSL3 2073 aa16.35■□□□□ 0.21
CLN3-225ENST00000566824 TRBV5-5A0A0J9YX44 114 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 SRRM5B3KS81 715 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 F5H0A9 414 aaPredicted RBP16.34■□□□□ 0.21
CLN3-225ENST00000566824 EEF1B2P24534 225 aaKnown RBP16.34■□□□□ 0.21
CLN3-225ENST00000566824 ZFP36P26651 326 aaKnown RBP16.34■□□□□ 0.21
CLN3-225ENST00000566824 GZMKP49863 264 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 MED22Q15528 200 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 PARP16Q8N5Y8 322 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 GPR148Q8TDV2 347 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 SPACA5Q96QH8 159 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 PATZ1Q9HBE1 687 aaKnown RBP16.34■□□□□ 0.21
CLN3-225ENST00000566824 HIVEP2P31629 2446 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 WNK2Q9Y3S1 2297 aa16.34■□□□□ 0.21
CLN3-225ENST00000566824 A0A1B0GW55 424 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 OOEPA6NGQ2 149 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 PLPP2O43688 288 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 FCN3O75636 299 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 GATBO75879 557 aaKnown RBP16.33■□□□□ 0.2
CLN3-225ENST00000566824 GYPAP02724 150 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 RPSAP08865 295 aaKnown RBP16.33■□□□□ 0.2
CLN3-225ENST00000566824 WNT2P09544 360 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4L2P0CJ85 424 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4L3P0CJ86 424 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4L4P0CJ87 422 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4L5P0CJ88 424 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4L6P0CJ89 424 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4L7P0CJ90 424 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 AZGP1P25311 298 aaKnown RBP16.33■□□□□ 0.2
CLN3-225ENST00000566824 FUT6P51993 359 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 TAS2R43P59537 309 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 ACSM1Q08AH1 577 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 INSL4Q14641 139 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 TEX36Q5VZQ5 186 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4L9Q6RFH8 374 aaPredicted RBP16.33■□□□□ 0.2
CLN3-225ENST00000566824 OR5T2Q8NGG2 359 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 OR51A2Q8NGJ7 313 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 OR10Z1Q8NGY1 313 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 ZCCHC4Q9H5U6 513 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 YAE1D1Q9NRH1 226 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 SNTG1Q9NSN8 517 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 TAS2R4Q9NYW5 299 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 CTSZQ9UBR2 303 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 DUX4Q9UBX2 424 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 SLC7A11Q9UPY5 501 aa16.33■□□□□ 0.2
CLN3-225ENST00000566824 NIPBLQ6KC79 2804 aaeCLIP16.33■□□□□ 0.2
CLN3-225ENST00000566824 F8VVB4 439 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms