RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 CHRFAM7AQ494W8 412 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 WIPI1Q5MNZ9 446 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 TMEM164Q5U3C3 297 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 ABHD17BQ5VST6 288 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 AADACL3Q5VUY0 350 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 ZNF774Q6NX45 483 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 PRSS54Q6PEW0 395 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 ALKAL2Q6UX46 152 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 MOB3CQ70IA8 216 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 KCTD9Q7L273 389 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 GALNTL5Q7Z4T8 443 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 C1QL2Q7Z5L3 287 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 DPPA2Q7Z7J5 298 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 CCDC36Q8IYA8 594 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 DEFB123Q8N688 67 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 INO80EQ8NBZ0 244 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 OR2M7Q8NG81 312 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 OR1S1Q8NH92 325 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 CASTOR1Q8WTX7 329 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 PSMF1Q92530 271 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 PIGTQ969N2 578 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 BORCS8Q96FH0 119 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 VRK1Q99986 396 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 C1QTNF5Q9BXJ0 243 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 OPA3Q9H6K4 179 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 ZNF703Q9H7S9 590 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 BCO1Q9HAY6 547 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 CRLF2Q9HC73 371 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 CHMP1AQ9HD42 196 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 GPR173Q9NS66 373 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 DEPPQ9NTK1 212 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 PARPBPQ9NWS1 579 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 EHFQ9NZC4 300 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 DNAJB11Q9UBS4 358 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 ZNF230Q9UIE0 474 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 SLC7A11Q9UPY5 501 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 MEMO1Q9Y316 297 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 KCNMB2Q9Y691 235 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 ARID1BQ8NFD5 2236 aaPredicted RBP5.45□□□□□ -1.54
CLN3-223ENST00000566472 RP1P56715 2156 aa5.45□□□□□ -1.54
CLN3-223ENST00000566472 LOC100509620A0A075B734 347 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 C5orf51A6NDU8 294 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ZNF724A8MTY0 619 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 NUDT19A8MXV4 375 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 C9orf172C9J069 976 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 EEF1E1-BLOC1S5C9J1V9 151 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 TRAPPC6AO75865 159 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 SPDEFO95238 335 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 SYNGR4O95473 234 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 NRASP01111 189 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 RLN2P04090 185 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 DBHP09172 617 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 RFPL3SP0C7P2 107 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 SP9P0CG40 484 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 TMEM225BP0DP42 221 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 TPT1P13693 172 aaKnown RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 PGAM2P15259 253 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 B4GALT1P15291 398 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ZNF250P15622 560 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 RPS2P15880 293 aaKnown RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 ZNF708P17019 499 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ACKR3P25106 362 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 CHATP28329 748 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 AVPR2P30518 371 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 STARP49675 285 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 NPY4RP50391 375 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 LHX2P50458 406 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 MTCP1P56278 107 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 CLDN15P56746 228 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 HGFACQ04756 655 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 RSU1Q15404 277 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 FAM209AQ5JX71 171 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 PLA2G2CQ5R387 149 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 UQCC3Q6UW78 93 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 CLEC18BQ6UXF7 455 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 COLCA1Q6ZS62 124 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 RTN4RL2Q86UN3 420 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 SAXO1Q8IYX7 474 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 STPG2Q8N412 459 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 TMEM105Q8N8V8 129 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 POC1AQ8NBT0 407 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 BVESQ8NE79 360 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 Q8NFD4 153 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 OR5D18Q8NGL1 313 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 OR10K1Q8NGX5 313 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ADAMTS17Q8TE56 1095 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 NPRL2Q8WTW4 380 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ROBO4Q8WZ75 1007 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ZNF837Q96EG3 531 aaPredicted RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 THOC3Q96J01 351 aaKnown RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 CXorf58Q96LI9 332 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 C2orf50Q96LR7 162 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 AQP10Q96PS8 301 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ALKBH3Q96Q83 286 aaPredicted RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 RTBDNQ9BSG5 229 aaPredicted RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 ST6GALNAC5Q9BVH7 336 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ZNF471Q9BX82 626 aaPredicted RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 SHARPINQ9H0F6 387 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ELL3Q9HB65 397 aaPredicted RBP5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms